Wall clock time and date at job start Thu Apr 9 2020 11:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34422 * 123.69478 * 2 1 4 4 O 1.36267 * 125.28614 * 359.97438 * 3 2 1 5 5 C 1.42901 * 117.00102 * 114.33469 * 4 3 2 6 6 C 1.50706 * 109.46906 * 185.14192 * 5 4 3 7 7 H 1.08001 * 120.00247 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99742 * 180.02562 * 6 5 4 9 9 N 1.31523 * 120.00048 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00147 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47171 * 59.99382 * 10 8 6 12 12 H 1.48504 * 109.46860 * 299.99842 * 10 8 6 13 13 H 1.48497 * 109.47161 * 179.97438 * 10 8 6 14 14 C 1.41284 * 109.43127 * 180.24148 * 3 2 1 15 15 O 1.21489 * 127.59394 * 179.72061 * 14 3 2 16 16 C 1.51569 * 104.81175 * 359.60719 * 14 3 2 17 17 H 1.09002 * 110.32669 * 119.08711 * 16 14 3 18 18 C 1.52999 * 110.63342 * 241.52238 * 16 14 3 19 19 O 1.34302 * 123.69029 * 179.97438 * 2 1 3 20 20 H 1.09006 * 109.47134 * 87.11456 * 1 2 3 21 21 H 1.08997 * 109.47228 * 207.11440 * 1 2 3 22 22 H 1.08996 * 109.46975 * 327.11745 * 1 2 3 23 23 H 1.08999 * 109.47206 * 65.14328 * 5 4 3 24 24 H 1.08997 * 109.47234 * 305.13953 * 5 4 3 25 25 H 0.96996 * 120.00189 * 0.02562 * 9 8 6 26 26 H 1.08994 * 109.47180 * 176.64263 * 18 16 14 27 27 H 1.09006 * 109.47198 * 296.64811 * 18 16 14 28 28 H 1.09009 * 109.46829 * 56.64185 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2528 1.1184 0.0000 4 8 1.7640 2.3904 -0.0005 5 6 2.0206 3.1845 1.1595 6 6 1.3033 4.5039 1.0338 7 1 0.7111 4.7151 0.1557 8 6 1.4040 5.4418 2.0393 9 7 2.1256 5.1848 3.1085 10 14 0.5144 7.0770 1.8839 11 1 -0.9459 6.8365 1.7625 12 1 1.0003 7.7920 0.6764 13 1 0.7811 7.9022 3.0893 14 6 3.6221 0.7703 -0.0056 15 8 4.5775 1.5206 -0.0119 16 6 3.6366 -0.7453 0.0008 17 1 4.1325 -1.1230 -0.8934 18 6 4.3310 -1.2725 1.2581 19 8 2.2520 -1.1175 0.0005 20 1 -0.3634 0.0517 -1.0264 21 1 -0.3633 -0.9147 0.4684 22 1 -0.3633 0.8630 0.5579 23 1 3.0925 3.3608 1.2493 24 1 1.6633 2.6597 2.0454 25 1 2.5873 4.3356 3.1894 26 1 4.2784 -2.3610 1.2729 27 1 5.3751 -0.9591 1.2551 28 1 3.8343 -0.8726 2.1422 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205609863.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:36 Heat of formation + Delta-G solvation = -121.669314 kcal Electronic energy + Delta-G solvation = -14089.467448 eV Core-core repulsion = 11491.919605 eV Total energy + Delta-G solvation = -2597.547843 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.07266 -39.61135 -38.83215 -35.43425 -33.67774 -32.54844 -30.12407 -28.90102 -25.35479 -24.93358 -22.08302 -21.95020 -19.34491 -18.77649 -17.88257 -17.27655 -16.61270 -16.00278 -15.65743 -15.45412 -15.27807 -14.93318 -14.57278 -14.39595 -14.01874 -13.57905 -13.28707 -13.18467 -13.03231 -12.71675 -12.43998 -11.95387 -11.91269 -11.00697 -10.75900 -10.32512 -9.50754 -8.92254 -6.64701 -0.37606 1.34235 1.50930 1.60662 1.71063 1.82063 2.44303 2.56432 2.96342 3.13908 3.36828 3.71526 3.80256 4.12621 4.24726 4.37080 4.46704 4.57241 4.60278 4.64856 4.74665 4.98252 5.08108 5.48125 5.59388 5.81677 6.12429 6.22913 6.74624 7.18135 8.47773 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.044257 B = 0.008086 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.516478 B = 3461.806709 C = 3796.630602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.176 3.824 3 C -0.226 4.226 4 O -0.310 6.310 5 C 0.204 3.796 6 C -0.625 4.625 7 H 0.062 0.938 8 C -0.028 4.028 9 N -0.925 5.925 10 Si 1.134 2.866 11 H -0.258 1.258 12 H -0.268 1.268 13 H -0.275 1.275 14 C 0.332 3.668 15 O -0.488 6.488 16 C 0.023 3.977 17 H 0.174 0.826 18 C -0.142 4.142 19 O -0.248 6.248 20 H 0.121 0.879 21 H 0.121 0.879 22 H 0.081 0.919 23 H -0.031 1.031 24 H -0.015 1.015 25 H 0.252 0.748 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 -15.289 -5.241 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 C -0.273 4.273 4 O -0.227 6.227 5 C 0.130 3.870 6 C -0.662 4.662 7 H 0.081 0.919 8 C -0.225 4.225 9 N -0.560 5.560 10 Si 0.951 3.049 11 H -0.182 1.182 12 H -0.194 1.194 13 H -0.200 1.200 14 C 0.217 3.783 15 O -0.370 6.370 16 C -0.034 4.034 17 H 0.191 0.809 18 C -0.199 4.199 19 O -0.158 6.158 20 H 0.139 0.861 21 H 0.139 0.861 22 H 0.100 0.900 23 H -0.013 1.013 24 H 0.002 0.998 25 H 0.061 0.939 26 H 0.136 0.864 27 H 0.109 0.891 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.379 -13.693 -4.611 14.643 hybrid contribution 1.030 -1.204 -0.482 1.656 sum -1.349 -14.897 -5.093 15.801 Atomic orbital electron populations 1.20914 0.82118 1.05886 1.06284 1.22929 0.96489 0.84019 0.84119 1.20396 0.94825 0.88165 1.23892 1.86172 1.75738 1.19864 1.40916 1.20173 0.93572 0.90457 0.82816 1.22207 1.34317 1.01023 1.08652 0.91949 1.27826 0.96344 1.07376 0.90956 1.70924 1.30165 1.25488 1.29472 0.82782 0.75791 0.69490 0.76857 1.18221 1.19353 1.20021 1.22677 0.89511 0.93458 0.72703 1.90594 1.43760 1.60877 1.41780 1.23765 0.81555 0.92187 1.05858 0.80940 1.21924 1.00676 1.04466 0.92841 1.86709 1.17470 1.27119 1.84480 0.86076 0.86092 0.90030 1.01345 0.99773 0.93940 0.86401 0.89113 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 10.22 71.24 0.73 -1.47 15 2 C 0.18 5.41 7.13 24.81 0.18 5.59 15 3 C -0.23 -9.67 6.14 22.15 0.14 -9.54 15 4 O -0.31 -16.72 9.96 -96.57 -0.96 -17.68 15 5 C 0.20 12.38 5.07 71.24 0.36 12.74 15 6 C -0.62 -39.13 9.43 25.60 0.24 -38.89 15 7 H 0.06 3.82 7.81 -2.91 -0.02 3.79 15 8 C -0.03 -1.68 5.46 84.65 0.46 -1.22 15 9 N -0.92 -59.56 13.65 21.45 0.29 -59.27 15 10 Si 1.13 51.10 29.90 68.60 2.05 53.15 15 11 H -0.26 -10.46 7.11 99.48 0.71 -9.76 15 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 13 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 14 C 0.33 13.40 7.05 26.71 0.19 13.59 15 15 O -0.49 -23.93 17.87 -3.64 -0.07 -24.00 15 16 C 0.02 0.57 4.34 30.12 0.13 0.71 15 17 H 0.17 3.12 8.14 -2.39 -0.02 3.10 15 18 C -0.14 -2.91 9.67 71.98 0.70 -2.21 15 19 O -0.25 -6.19 10.76 -75.73 -0.81 -7.00 15 20 H 0.12 2.23 8.14 -2.38 -0.02 2.21 15 21 H 0.12 1.85 8.14 -2.39 -0.02 1.83 15 22 H 0.08 2.30 8.06 -2.39 -0.02 2.28 15 23 H -0.03 -2.08 7.84 -2.39 -0.02 -2.10 15 24 H -0.02 -0.94 8.01 -2.39 -0.02 -0.96 15 25 H 0.25 16.67 7.22 -92.71 -0.67 16.00 15 26 H 0.12 1.53 8.14 -2.39 -0.02 1.51 15 27 H 0.09 1.82 8.14 -2.38 -0.02 1.80 15 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 15 Total: -1.00 -81.49 255.79 4.88 -76.61 By element: Atomic # 1 Polarization: -2.36 SS G_CDS: 1.25 Total: -1.10 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 3.12 Total: -20.70 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.29 Total: -59.27 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -1.84 Total: -48.68 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Total: -81.49 4.88 -76.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609863.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.057 kcal (2) G-P(sol) polarization free energy of solvation -81.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds