Wall clock time and date at job start Thu Apr 9 2020 11:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.45644 * 117.70674 * 2 1 4 4 C 1.53182 * 110.66597 * 157.95425 * 3 2 1 5 5 N 1.47266 * 108.06896 * 47.05691 * 4 3 2 6 6 C 1.36940 * 121.34973 * 118.36471 * 5 4 3 7 7 H 1.07997 * 119.99556 * 150.87863 * 6 5 4 8 8 C 1.38806 * 120.00092 * 330.87661 * 6 5 4 9 9 N 1.31625 * 120.00166 * 342.77200 * 8 6 5 10 10 Si 1.86801 * 120.00079 * 162.77627 * 8 6 5 11 11 H 1.48498 * 109.46713 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47382 * 119.99923 * 10 8 6 13 13 H 1.48497 * 109.46945 * 239.99935 * 10 8 6 14 14 C 1.47042 * 117.29201 * 298.33617 * 5 4 3 15 15 C 1.52997 * 109.57320 * 282.91755 * 14 5 4 16 16 C 1.53003 * 109.56830 * 162.56060 * 14 5 4 17 17 C 1.33382 * 117.70407 * 180.25586 * 2 1 3 18 18 O 1.21284 * 118.48800 * 4.28039 * 17 2 1 19 19 H 1.09000 * 109.47257 * 179.73578 * 1 2 3 20 20 H 1.09000 * 109.46530 * 59.74067 * 1 2 3 21 21 H 1.08995 * 109.47682 * 299.74251 * 1 2 3 22 22 H 1.08997 * 109.21872 * 278.45034 * 3 2 1 23 23 H 1.09000 * 109.21533 * 37.78127 * 3 2 1 24 24 H 1.09003 * 109.90514 * 287.34034 * 4 3 2 25 25 H 1.08999 * 109.64633 * 166.62157 * 4 3 2 26 26 H 0.96999 * 119.99886 * 179.97438 * 9 8 6 27 27 H 1.08998 * 109.47048 * 179.40700 * 15 14 5 28 28 H 1.08994 * 109.46943 * 299.40969 * 15 14 5 29 29 H 1.08997 * 109.46968 * 59.40625 * 15 14 5 30 30 H 1.09002 * 109.46874 * 300.60312 * 16 14 5 31 31 H 1.09002 * 109.46883 * 60.59057 * 16 14 5 32 32 H 1.08998 * 109.47436 * 180.59613 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1421 1.2894 0.0000 4 6 3.5696 1.1504 0.5380 5 7 4.1972 -0.0051 -0.1252 6 6 5.3106 0.1413 -0.9088 7 1 6.0176 -0.6701 -0.9994 8 6 5.5306 1.3325 -1.5865 9 7 4.5413 2.1830 -1.7608 10 14 7.2308 1.7287 -2.2513 11 1 8.1609 0.6179 -1.9252 12 1 7.1590 1.8985 -3.7248 13 1 7.7242 2.9849 -1.6318 14 6 3.5799 -1.3224 0.0887 15 6 3.9588 -1.8469 1.4752 16 6 4.0705 -2.2983 -0.9827 17 6 2.0851 -1.1809 -0.0053 18 8 1.4129 -2.1869 -0.0893 19 1 -0.3634 -1.0276 -0.0047 20 1 -0.3632 0.5179 -0.8877 21 1 -0.3634 0.5098 0.8922 22 1 2.1750 1.6774 -1.0181 23 1 1.5887 1.9853 0.6306 24 1 3.5459 0.9879 1.6156 25 1 4.1353 2.0549 0.3142 26 1 4.6951 3.0156 -2.2341 27 1 3.4918 -2.8186 1.6361 28 1 5.0419 -1.9488 1.5415 29 1 3.6124 -1.1469 2.2355 30 1 3.8037 -1.9191 -1.9691 31 1 5.1536 -2.3996 -0.9132 32 1 3.6039 -3.2713 -0.8290 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087289230.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:26 Heat of formation + Delta-G solvation = -23.380357 kcal Electronic energy + Delta-G solvation = -15349.033861 eV Core-core repulsion = 12923.873993 eV Total energy + Delta-G solvation = -2425.159869 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.46484 -37.92141 -36.66854 -34.32226 -31.92823 -29.95084 -28.18006 -27.81458 -26.07666 -23.61655 -22.77353 -19.51933 -18.17564 -17.94137 -17.01129 -16.65553 -16.39323 -15.55862 -15.15337 -14.85798 -14.30736 -13.99789 -13.62941 -13.32624 -13.18857 -13.00807 -12.86540 -12.72119 -12.70106 -12.45074 -12.19755 -12.02626 -11.76910 -11.56612 -10.77525 -10.47682 -9.58487 -8.64626 -7.86716 -5.33150 1.50115 1.54694 1.62756 1.71118 2.22043 2.52741 3.31115 3.45517 3.71109 4.16162 4.29785 4.38589 4.50553 4.53187 4.67335 4.72422 4.84269 4.87544 4.90995 4.94815 5.06787 5.24808 5.33758 5.38163 5.54585 5.62171 5.74668 6.37372 6.55715 7.12686 7.23111 7.77375 8.33851 9.19934 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.037493 B = 0.012642 C = 0.010726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.631708 B = 2214.303217 C = 2609.741123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.604 5.604 3 C 0.112 3.888 4 C 0.148 3.852 5 N -0.594 5.594 6 C -0.254 4.254 7 H 0.071 0.929 8 C -0.038 4.038 9 N -0.920 5.920 10 Si 0.963 3.037 11 H -0.270 1.270 12 H -0.298 1.298 13 H -0.290 1.290 14 C 0.167 3.833 15 C -0.134 4.134 16 C -0.111 4.111 17 C 0.507 3.493 18 O -0.599 6.599 19 H 0.074 0.926 20 H 0.063 0.937 21 H 0.082 0.918 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.029 0.971 25 H 0.087 0.913 26 H 0.251 0.749 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 -1.414 4.968 6.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.334 5.334 3 C -0.011 4.011 4 C 0.023 3.977 5 N -0.318 5.318 6 C -0.383 4.383 7 H 0.089 0.911 8 C -0.235 4.235 9 N -0.565 5.565 10 Si 0.792 3.208 11 H -0.195 1.195 12 H -0.226 1.226 13 H -0.216 1.216 14 C 0.076 3.924 15 C -0.193 4.193 16 C -0.169 4.169 17 C 0.295 3.705 18 O -0.482 6.482 19 H 0.092 0.908 20 H 0.082 0.918 21 H 0.100 0.900 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.047 0.953 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.369 -1.743 4.832 6.143 hybrid contribution 0.630 0.619 -0.729 1.145 sum -2.738 -1.124 4.104 5.060 Atomic orbital electron populations 1.21855 0.79576 1.03639 1.02509 1.47367 1.08023 1.06796 1.71234 1.21913 0.94657 0.82522 1.02054 1.21177 0.91252 0.92884 0.92415 1.44510 1.31040 1.01320 1.54979 1.19343 0.97407 1.00521 1.21051 0.91104 1.25668 1.00217 0.99223 0.98348 1.70075 1.30546 1.11332 1.44568 0.85282 0.80864 0.77757 0.76893 1.19470 1.22578 1.21620 1.20334 0.86352 0.88659 0.97075 1.21991 1.02280 1.00241 0.94804 1.21597 1.01569 0.97131 0.96634 1.21305 0.92304 0.82665 0.74249 1.90530 1.67028 1.36975 1.53666 0.90753 0.91824 0.89956 0.92541 0.89701 0.95339 0.89492 0.93938 0.91788 0.91073 0.93093 0.94921 0.90938 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.11 10.43 127.77 1.33 3.45 16 2 N -0.60 -24.13 3.20 -850.99 -2.72 -26.85 16 3 C 0.11 4.47 6.52 86.60 0.56 5.03 16 4 C 0.15 6.46 5.56 86.29 0.48 6.94 16 5 N -0.59 -27.96 2.63 -655.97 -1.72 -29.69 16 6 C -0.25 -12.88 8.63 84.03 0.73 -12.15 16 7 H 0.07 3.55 6.56 -2.91 -0.02 3.53 16 8 C -0.04 -1.95 4.95 84.86 0.42 -1.53 16 9 N -0.92 -48.91 10.38 21.65 0.22 -48.69 16 10 Si 0.96 42.30 29.59 68.60 2.03 44.33 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 13 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.17 7.12 0.99 2.67 0.00 7.12 16 15 C -0.13 -4.83 8.68 71.98 0.62 -4.21 16 16 C -0.11 -4.60 7.41 71.98 0.53 -4.07 16 17 C 0.51 22.29 6.35 87.79 0.56 22.85 16 18 O -0.60 -27.94 15.35 -3.04 -0.05 -27.99 16 19 H 0.07 2.52 6.59 -2.39 -0.02 2.51 16 20 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.06 2.60 7.34 -2.39 -0.02 2.59 16 23 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 24 H 0.03 1.14 7.50 -2.39 -0.02 1.13 16 25 H 0.09 4.19 5.93 -2.39 -0.01 4.17 16 26 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 1.78 7.48 -2.39 -0.02 1.76 16 30 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 31 H 0.07 2.83 6.83 -2.39 -0.02 2.82 16 32 H 0.06 2.48 7.87 -2.39 -0.02 2.46 16 Total: -1.00 -59.07 255.15 4.10 -54.98 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.10 Total: 10.48 kcal Atomic # 6 Polarization: 18.18 SS G_CDS: 5.24 Total: 23.42 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -4.22 Total: -105.23 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -59.07 4.10 -54.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087289230.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.595 kcal (2) G-P(sol) polarization free energy of solvation -59.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds