Wall clock time and date at job start Thu Apr 9 2020 11:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21284 * 119.99827 * 2 1 4 4 N 1.34779 * 120.00378 * 179.97438 * 2 1 3 5 5 C 1.46491 * 120.00284 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.50014 * 325.07356 * 5 4 2 7 7 C 1.53035 * 109.50173 * 205.00514 * 5 4 2 8 8 C 1.53045 * 109.54272 * 178.68713 * 7 5 4 9 9 C 1.53188 * 109.31391 * 61.36108 * 8 7 5 10 10 N 1.46936 * 108.89281 * 305.29783 * 9 8 7 11 11 C 1.36935 * 120.62903 * 233.68017 * 10 9 8 12 12 H 1.08007 * 119.99920 * 27.39746 * 11 10 9 13 13 C 1.38804 * 120.00238 * 207.39383 * 11 10 9 14 14 N 1.31624 * 120.00025 * 17.25587 * 13 11 10 15 15 Si 1.86801 * 120.00311 * 197.25673 * 13 11 10 16 16 H 1.48497 * 109.47244 * 60.00150 * 15 13 11 17 17 H 1.48504 * 109.46988 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47113 * 300.00082 * 15 13 11 19 19 C 1.47199 * 118.55327 * 53.53951 * 10 9 8 20 20 H 1.09001 * 109.47372 * 240.00747 * 1 2 3 21 21 H 1.08999 * 109.47586 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47266 * 120.00725 * 1 2 3 23 23 H 0.97002 * 119.99652 * 0.02562 * 4 2 1 24 24 H 1.08996 * 109.46407 * 58.66048 * 7 5 4 25 25 H 1.09002 * 109.45723 * 298.70480 * 7 5 4 26 26 H 1.09001 * 109.49105 * 301.41375 * 8 7 5 27 27 H 1.08999 * 109.52410 * 181.33016 * 8 7 5 28 28 H 1.08994 * 109.58954 * 65.15196 * 9 8 7 29 29 H 1.08992 * 109.58924 * 185.43968 * 9 8 7 30 30 H 0.96996 * 120.00327 * 179.97438 * 14 13 11 31 31 H 1.09006 * 109.53081 * 186.67784 * 19 10 9 32 32 H 1.09002 * 109.68302 * 66.36980 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0094 -0.3251 -0.5890 7 6 4.1565 -2.4749 -0.6091 8 6 5.6866 -2.4620 -0.6402 9 6 6.2215 -2.3540 0.7912 10 7 5.6238 -1.1761 1.4349 11 6 6.4154 -0.2214 2.0154 12 1 7.4216 -0.0628 1.6564 13 6 5.9247 0.5426 3.0652 14 7 4.8579 0.1452 3.7259 15 14 6.7781 2.1348 3.5404 16 1 6.7681 3.0661 2.3838 17 1 6.0637 2.7572 4.6839 18 1 8.1813 1.8466 3.9318 19 6 4.1577 -1.0444 1.4386 20 1 -0.3634 -0.5137 0.8900 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3634 -0.5139 -0.8899 23 1 1.6959 -2.0072 0.0005 24 1 3.7735 -2.5765 -1.6245 25 1 3.8126 -3.3151 -0.0058 26 1 6.0313 -1.6078 -1.2229 27 1 6.0494 -3.3834 -1.0956 28 1 5.9540 -3.2508 1.3499 29 1 7.3060 -2.2473 0.7689 30 1 4.5151 0.6788 4.4598 31 1 3.8803 -0.0711 1.8434 32 1 3.7199 -1.8330 2.0507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108148372.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:36 Heat of formation + Delta-G solvation = -26.089284 kcal Electronic energy + Delta-G solvation = -14746.809927 eV Core-core repulsion = 12321.532591 eV Total energy + Delta-G solvation = -2425.277336 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.26405 -37.18683 -34.02474 -32.63635 -30.37021 -29.83650 -27.84366 -25.23749 -22.24205 -21.86995 -19.93906 -19.23434 -16.73540 -16.37762 -15.58724 -14.94557 -14.47925 -13.99147 -13.55320 -13.26209 -13.02131 -12.54755 -12.37591 -12.25481 -11.92394 -11.75855 -10.98369 -10.70432 -10.67073 -10.45063 -10.23378 -9.95531 -9.90101 -9.49224 -9.29090 -8.47250 -8.39449 -6.62672 -5.72170 -3.15049 3.13371 3.45237 3.51390 3.54053 3.71736 4.57419 5.14562 5.38824 5.40343 5.45289 5.53994 5.57446 5.66512 5.72270 5.99658 6.11927 6.17512 6.36896 6.44591 6.54744 6.73398 6.80545 6.98219 7.02553 7.34456 7.76353 7.86199 8.03123 8.51308 8.75491 9.26070 9.90407 10.45631 11.36106 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.012293 C = 0.009034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.934921 B = 2277.154251 C = 3098.567610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.503 3.497 3 O -0.541 6.541 4 N -0.723 5.723 5 C 0.115 3.885 6 H 0.080 0.920 7 C -0.115 4.115 8 C -0.131 4.131 9 C 0.142 3.858 10 N -0.589 5.589 11 C -0.257 4.257 12 H 0.066 0.934 13 C 0.006 3.994 14 N -0.900 5.900 15 Si 0.903 3.097 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.166 3.834 20 H 0.084 0.916 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.392 0.608 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.055 0.945 30 H 0.254 0.746 31 H 0.094 0.906 32 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 -5.852 -7.900 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.289 3.711 3 O -0.418 6.418 4 N -0.374 5.374 5 C 0.010 3.990 6 H 0.098 0.902 7 C -0.154 4.154 8 C -0.171 4.171 9 C 0.016 3.984 10 N -0.312 5.312 11 C -0.386 4.386 12 H 0.084 0.916 13 C -0.193 4.193 14 N -0.544 5.544 15 Si 0.733 3.267 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.039 3.961 20 H 0.103 0.897 21 H 0.106 0.894 22 H 0.100 0.900 23 H 0.225 0.775 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.339 -4.992 -7.730 11.175 hybrid contribution 0.050 0.324 0.318 0.457 sum -6.289 -4.669 -7.412 10.784 Atomic orbital electron populations 1.21902 0.92669 1.04977 1.03640 1.20681 0.90185 0.83975 0.76219 1.90753 1.70706 1.31334 1.49028 1.46120 1.08028 1.07984 1.75291 1.21930 0.77675 0.97705 1.01735 0.90172 1.21669 0.97027 0.97316 0.99338 1.22004 0.94466 1.00585 1.00072 1.20947 0.96737 0.90280 0.90458 1.44022 1.01416 1.20740 1.65028 1.19112 0.97527 1.11507 1.10492 0.91616 1.25026 0.98365 1.00214 0.95712 1.70005 1.25395 1.37617 1.21413 0.86358 0.78690 0.83969 0.77697 1.20865 1.21614 1.20912 1.21135 0.83170 1.02542 0.89245 0.89683 0.89439 0.90049 0.77513 0.93178 0.92303 0.92150 0.92650 0.96445 0.92667 0.93615 0.88762 0.96536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.32 36.00 0.37 -1.64 16 2 C 0.50 8.93 7.91 -10.99 -0.09 8.84 16 3 O -0.54 -12.68 16.75 5.55 0.09 -12.59 16 4 N -0.72 -11.96 5.08 -53.70 -0.27 -12.23 16 5 C 0.12 2.31 2.61 -67.82 -0.18 2.14 16 6 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 7 C -0.12 -1.90 5.35 -26.69 -0.14 -2.04 16 8 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 9 C 0.14 3.01 6.51 -3.71 -0.02 2.99 16 10 N -0.59 -15.37 3.01 -172.09 -0.52 -15.89 16 11 C -0.26 -7.39 9.59 -15.06 -0.14 -7.53 16 12 H 0.07 1.84 7.89 -52.48 -0.41 1.42 16 13 C 0.01 0.17 4.92 -17.43 -0.09 0.08 16 14 N -0.90 -27.42 11.18 55.49 0.62 -26.80 16 15 Si 0.90 22.95 29.59 -169.99 -5.03 17.93 16 16 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 17 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.17 4.16 4.91 -3.56 -0.02 4.14 16 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.09 1.03 8.12 -51.93 -0.42 0.61 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.39 4.93 8.60 -40.82 -0.35 4.58 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 30 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.09 2.79 6.04 -51.93 -0.31 2.47 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 264.72 15.07 3.99 3.99 Total: -1.00 -34.07 264.72 -6.41 -40.48 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.82 Total: 0.58 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.47 Total: 4.54 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.17 Total: -54.92 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.93 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.07 -6.41 -40.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108148372.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.387 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds