Wall clock time and date at job start Thu Apr 9 2020 11:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 5 5 C 1.52997 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47346 * 59.99594 * 6 5 4 8 8 O 1.42905 * 109.47086 * 179.97438 * 7 6 5 9 9 C 1.34919 * 117.00195 * 270.00363 * 8 7 6 10 10 H 1.08006 * 120.00128 * 0.02562 * 9 8 7 11 11 C 1.38636 * 120.00213 * 179.97438 * 9 8 7 12 12 N 1.31584 * 119.99977 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00303 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47105 * 90.00120 * 13 11 9 15 15 H 1.48503 * 109.47356 * 210.00202 * 13 11 9 16 16 H 1.48504 * 109.47008 * 330.00114 * 13 11 9 17 17 C 1.52997 * 109.47415 * 300.00136 * 7 6 5 18 18 C 1.52999 * 109.46626 * 59.99702 * 4 2 1 19 19 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 20 20 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 22 22 H 1.09000 * 109.47140 * 239.99453 * 2 1 3 23 23 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 25 25 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 26 26 H 1.09000 * 109.47050 * 300.00004 * 4 2 1 27 27 H 1.09000 * 109.47140 * 299.99948 * 5 4 2 28 28 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 29 29 H 1.09004 * 109.47368 * 299.99783 * 6 5 4 30 30 H 1.08996 * 109.47261 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46986 * 60.00254 * 7 6 5 32 32 H 0.96996 * 120.00429 * 180.02562 * 12 11 9 33 33 H 1.09000 * 109.47140 * 300.00024 * 17 7 6 34 34 H 1.09001 * 109.46922 * 179.97438 * 17 7 6 35 35 H 1.08993 * 109.47839 * 299.99931 * 18 4 2 36 36 H 1.09000 * 109.47160 * 60.00369 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5700 -0.7217 1.2490 6 6 4.0799 -1.4434 2.4980 7 6 3.5693 -2.8857 2.4979 8 8 4.0462 -3.5599 3.6642 9 6 5.2316 -4.1961 3.5623 10 1 5.7747 -4.1799 2.6289 11 6 5.7530 -4.8698 4.6561 12 7 5.0915 -4.8892 5.7934 13 14 7.3939 -5.7512 4.5149 14 1 8.4899 -4.8184 4.8807 15 1 7.4097 -6.9180 5.4333 16 1 7.5865 -6.2179 3.1183 17 6 2.0393 -2.8852 2.4982 18 6 1.5299 -2.1636 1.2494 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6767 -0.2073 2.1393 27 1 3.9329 -1.2359 0.3591 28 1 3.9337 0.3058 1.2487 29 1 3.7170 -0.9296 3.3882 30 1 5.1699 -1.4434 2.4980 31 1 3.9323 -3.3996 1.6078 32 1 5.4565 -5.3602 6.5588 33 1 1.6764 -2.3713 3.3883 34 1 1.6757 -3.9127 2.4977 35 1 0.4400 -2.1637 1.2494 36 1 1.8932 -2.6775 0.3595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000200995086.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:50 Heat of formation + Delta-G solvation = -94.290894 kcal Electronic energy + Delta-G solvation = -14647.891995 eV Core-core repulsion = 12323.197558 eV Total energy + Delta-G solvation = -2324.694437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29960 -38.01340 -35.16368 -33.58870 -31.84555 -29.48697 -27.92972 -26.64031 -23.52979 -23.27102 -20.94639 -20.62165 -19.58070 -17.61042 -16.48064 -15.99674 -15.34402 -15.17715 -15.01579 -14.76880 -14.44044 -13.95918 -13.51255 -13.42934 -13.16074 -12.94801 -12.77388 -12.66780 -12.31889 -12.15569 -11.97601 -11.96922 -11.68954 -11.49580 -11.30942 -11.11547 -10.90362 -10.68848 -10.05654 -8.16617 -5.84990 1.37818 1.44701 1.53739 2.33162 3.15836 3.56391 3.79983 3.87794 3.96518 4.23044 4.30901 4.39485 4.47755 4.51735 4.62417 4.66952 4.72052 4.79149 4.90614 5.00006 5.07651 5.08363 5.12816 5.16286 5.17932 5.26169 5.27612 5.36990 5.42436 5.46886 5.51016 5.63502 5.68254 6.22778 7.26550 8.11131 9.08782 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.064453 B = 0.006386 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.321752 B = 4383.315346 C = 4583.787409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.079 4.079 5 C -0.101 4.101 6 C -0.131 4.131 7 C 0.088 3.912 8 O -0.334 6.334 9 C -0.370 4.370 10 H 0.068 0.932 11 C -0.046 4.046 12 N -0.942 5.942 13 Si 1.003 2.997 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.259 1.259 17 C -0.109 4.109 18 C -0.100 4.100 19 H 0.063 0.937 20 H 0.058 0.942 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 10.020 -13.050 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.097 4.097 5 C -0.139 4.139 6 C -0.169 4.169 7 C 0.029 3.971 8 O -0.250 6.250 9 C -0.449 4.449 10 H 0.086 0.914 11 C -0.238 4.238 12 N -0.588 5.588 13 Si 0.826 3.174 14 H -0.196 1.196 15 H -0.203 1.203 16 H -0.184 1.184 17 C -0.147 4.147 18 C -0.137 4.137 19 H 0.082 0.918 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.583 9.968 -12.749 17.470 hybrid contribution 0.935 -0.601 0.352 1.166 sum -5.647 9.367 -12.396 16.531 Atomic orbital electron populations 1.21893 0.94587 1.02082 1.01968 1.21098 0.96257 0.96240 0.96932 1.21894 1.01187 0.95533 1.01957 1.21205 0.94426 0.95338 0.98764 1.21566 0.95935 1.00262 0.96116 1.21960 0.99552 0.96370 0.98992 1.22111 0.94587 0.92155 0.88208 1.85597 1.37068 1.68149 1.34225 1.21336 0.96412 1.29145 0.97978 0.91445 1.26212 1.03364 0.99759 0.94473 1.70198 1.40569 1.45509 1.02498 0.84788 0.76514 0.77596 0.78551 1.19582 1.20300 1.18356 1.21530 0.93510 1.00270 0.99398 1.21558 1.01074 0.95133 0.95947 0.91802 0.92317 0.92879 0.91041 0.92588 0.91768 0.92902 0.91794 0.91923 0.90404 0.93427 0.94057 0.95147 0.93163 0.92964 0.93211 0.89703 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.84 71.98 0.64 -1.86 16 2 C -0.09 -1.67 2.51 -10.79 -0.03 -1.70 16 3 C -0.15 -2.57 8.84 71.98 0.64 -1.94 16 4 C -0.08 -1.99 1.78 -10.79 -0.02 -2.01 16 5 C -0.10 -2.91 4.85 30.59 0.15 -2.76 16 6 C -0.13 -5.20 5.54 30.59 0.17 -5.03 16 7 C 0.09 4.03 2.65 30.59 0.08 4.11 16 8 O -0.33 -20.34 9.43 -81.88 -0.77 -21.12 16 9 C -0.37 -22.70 9.77 67.92 0.66 -22.03 16 10 H 0.07 3.88 7.64 -2.91 -0.02 3.86 16 11 C -0.05 -2.78 5.49 84.83 0.47 -2.32 16 12 N -0.94 -61.97 13.67 21.61 0.30 -61.68 16 13 Si 1.00 46.46 29.55 68.60 2.03 48.49 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 17 C -0.11 -4.20 5.57 30.58 0.17 -4.03 16 18 C -0.10 -2.75 4.85 30.58 0.15 -2.60 16 19 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 20 H 0.06 0.99 6.43 -2.39 -0.02 0.97 16 21 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 0.99 6.43 -2.39 -0.02 0.98 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.95 6.43 -2.39 -0.02 1.94 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.03 1.40 7.80 -2.39 -0.02 1.38 16 32 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 1.98 6.43 -2.39 -0.02 1.97 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -71.70 281.84 5.64 -66.06 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.01 Total: 10.42 kcal Atomic # 6 Polarization: -45.24 SS G_CDS: 3.07 Total: -42.16 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.30 Total: -61.68 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.77 Total: -21.12 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -71.70 5.64 -66.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200995086.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.233 kcal (2) G-P(sol) polarization free energy of solvation -71.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds