Wall clock time and date at job start Thu Apr 9 2020 11:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.62953 * 2 1 4 4 C 1.53238 * 109.62366 * 120.38706 * 2 1 3 5 5 N 1.46901 * 109.33721 * 173.53952 * 4 2 1 6 6 C 1.46897 * 111.00144 * 172.75005 * 5 4 2 7 7 C 1.46908 * 111.26693 * 296.89409 * 5 4 2 8 8 C 1.53237 * 109.33933 * 63.10647 * 7 5 4 9 9 N 1.47080 * 109.62671 * 239.61140 * 2 1 3 10 10 C 1.34775 * 120.88288 * 9.11349 * 9 2 1 11 11 O 1.21686 * 119.99938 * 5.69830 * 10 9 2 12 12 C 1.46380 * 119.99891 * 185.70765 * 10 9 2 13 13 H 1.08001 * 119.99924 * 8.35978 * 12 10 9 14 14 C 1.40049 * 119.99837 * 188.36330 * 12 10 9 15 15 N 1.30676 * 120.00002 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99737 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47117 * 90.00094 * 16 14 12 18 18 H 1.48508 * 109.46727 * 209.99790 * 16 14 12 19 19 H 1.48499 * 109.46972 * 329.99539 * 16 14 12 20 20 H 1.09001 * 109.47386 * 291.49776 * 1 2 3 21 21 H 1.09006 * 109.47036 * 51.49935 * 1 2 3 22 22 H 1.09004 * 109.47076 * 171.49497 * 1 2 3 23 23 H 1.08996 * 109.49436 * 293.49417 * 4 2 1 24 24 H 1.09002 * 109.49574 * 53.58300 * 4 2 1 25 25 H 1.08999 * 109.47582 * 59.99520 * 6 5 4 26 26 H 1.08996 * 109.47482 * 180.02562 * 6 5 4 27 27 H 1.09009 * 109.46955 * 299.99555 * 6 5 4 28 28 H 1.09000 * 109.48591 * 183.06281 * 7 5 4 29 29 H 1.08991 * 109.49081 * 303.14102 * 7 5 4 30 30 H 1.09006 * 109.63018 * 65.87661 * 8 7 5 31 31 H 1.09002 * 109.62643 * 186.26072 * 8 7 5 32 32 H 0.96996 * 119.99953 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0447 -0.7301 1.2451 5 7 3.5054 -0.8624 1.1624 6 6 4.0567 -1.4021 2.4125 7 6 3.9015 -1.6872 0.0131 8 6 3.4629 -0.9963 -1.2825 9 7 2.0241 -0.7008 -1.1950 10 6 1.1807 -1.0664 -2.1807 11 8 0.0128 -0.7275 -2.1390 12 6 1.6697 -1.8714 -3.3012 13 1 2.6667 -2.2859 -3.2738 14 6 0.8448 -2.1041 -4.4088 15 7 -0.3616 -1.6029 -4.4417 16 14 1.4691 -3.1307 -5.8390 17 1 1.1375 -4.5591 -5.6049 18 1 0.8243 -2.6724 -7.0959 19 1 2.9416 -2.9766 -5.9533 20 1 -0.3634 0.3766 0.9562 21 1 -0.3633 0.6398 -0.8043 22 1 -0.3633 -1.0164 -0.1520 23 1 1.7810 -0.1602 2.1360 24 1 1.5923 -1.7204 1.2991 25 1 3.6270 -2.3853 2.6046 26 1 5.1396 -1.4894 2.3242 27 1 3.8126 -0.7316 3.2366 28 1 4.9844 -1.8112 0.0105 29 1 3.4233 -2.6640 0.0843 30 1 4.0177 -0.0664 -1.4075 31 1 3.6541 -1.6536 -2.1308 32 1 -0.9328 -1.7638 -5.2089 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219895403.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:01 Heat of formation + Delta-G solvation = -38.044668 kcal Electronic energy + Delta-G solvation = -14903.327460 eV Core-core repulsion = 12477.531699 eV Total energy + Delta-G solvation = -2425.795761 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69903 -38.28320 -35.22203 -34.57928 -33.52491 -29.67542 -28.09243 -27.78396 -24.87501 -23.43552 -22.27865 -20.42061 -18.38444 -17.57619 -16.60245 -16.31975 -16.11450 -15.63183 -15.53329 -15.41804 -14.51857 -13.75731 -13.49591 -13.38163 -13.16646 -12.99683 -12.88049 -12.62464 -12.55537 -12.29809 -12.06125 -11.99452 -11.88695 -11.64840 -10.91085 -9.45397 -9.28575 -8.93548 -8.21564 -6.80313 1.39573 1.40743 1.55546 2.23872 2.49247 2.74433 3.04657 3.63259 3.98047 4.06902 4.14932 4.31580 4.40907 4.50598 4.62652 4.67889 4.74501 4.77320 4.85304 4.92554 5.02880 5.08967 5.33158 5.40061 5.57299 5.75589 6.01638 6.11551 6.18998 6.46978 6.90989 7.47702 8.51929 8.70772 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042128 B = 0.009957 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.474656 B = 2811.292497 C = 3346.505194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.148 3.852 3 H 0.059 0.941 4 C 0.059 3.941 5 N -0.550 5.550 6 C 0.027 3.973 7 C 0.049 3.951 8 C 0.121 3.879 9 N -0.647 5.647 10 C 0.542 3.458 11 O -0.611 6.611 12 C -0.572 4.572 13 H 0.089 0.911 14 C 0.031 3.969 15 N -0.823 5.823 16 Si 0.992 3.008 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.247 1.247 20 H 0.060 0.940 21 H 0.043 0.957 22 H 0.027 0.973 23 H 0.102 0.898 24 H 0.017 0.983 25 H 0.021 0.979 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.863 -1.116 8.682 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.044 3.956 3 H 0.077 0.923 4 C -0.070 4.070 5 N -0.275 5.275 6 C -0.121 4.121 7 C -0.080 4.080 8 C -0.002 4.002 9 N -0.385 5.385 10 C 0.347 3.653 11 O -0.498 6.498 12 C -0.609 4.609 13 H 0.107 0.893 14 C -0.184 4.184 15 N -0.453 5.453 16 Si 0.812 3.188 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.170 1.170 20 H 0.078 0.922 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.120 0.880 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.127 0.873 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.275 -0.430 8.567 12.633 hybrid contribution -0.541 -1.142 -0.629 1.412 sum 8.734 -1.572 7.937 11.906 Atomic orbital electron populations 1.21759 0.94248 1.01204 0.99440 1.21083 0.94198 0.95159 0.85152 0.92324 1.22442 0.87797 0.98637 0.98098 1.61960 1.10109 1.50993 1.04400 1.22438 1.00894 0.97928 0.90804 1.22496 1.01557 0.93585 0.90365 1.21683 0.80879 0.99904 0.97781 1.48250 1.08168 1.61935 1.20140 1.18561 0.84645 0.79962 0.82083 1.90582 1.19462 1.60888 1.78847 1.21509 1.02442 1.34112 1.02821 0.89293 1.26915 0.93981 0.95452 1.02045 1.70169 1.08429 1.37228 1.29486 0.85101 0.79858 0.78011 0.75861 1.18967 1.19890 1.17001 0.92153 0.93802 0.95396 0.88032 0.96492 0.96084 0.89673 0.90106 0.87256 0.96119 0.92247 0.89490 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.84 7.64 71.98 0.55 -4.29 16 2 C 0.15 6.08 3.64 44.96 0.16 6.24 16 3 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 4 C 0.06 1.94 4.91 86.38 0.42 2.36 16 5 N -0.55 -15.94 4.88 -921.47 -4.50 -20.44 16 6 C 0.03 0.56 9.58 127.69 1.22 1.79 16 7 C 0.05 1.48 5.62 86.38 0.49 1.97 16 8 C 0.12 4.58 6.51 86.34 0.56 5.14 16 9 N -0.65 -30.59 3.02 -798.95 -2.41 -33.00 16 10 C 0.54 31.69 7.38 86.36 0.64 32.33 16 11 O -0.61 -40.04 10.79 -4.30 -0.05 -40.09 16 12 C -0.57 -32.49 8.84 24.83 0.22 -32.27 16 13 H 0.09 4.54 5.75 -2.91 -0.02 4.52 16 14 C 0.03 1.72 5.50 85.30 0.47 2.19 16 15 N -0.82 -50.53 11.86 21.84 0.26 -50.28 16 16 Si 0.99 41.12 29.56 68.60 2.03 43.15 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 20 H 0.06 2.13 8.13 -2.39 -0.02 2.11 16 21 H 0.04 2.25 6.64 -2.38 -0.02 2.23 16 22 H 0.03 1.40 6.92 -2.39 -0.02 1.39 16 23 H 0.10 2.72 8.11 -2.39 -0.02 2.70 16 24 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 27 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.11 2.57 8.06 -2.39 -0.02 2.55 16 29 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.09 3.39 5.41 -2.39 -0.01 3.38 16 32 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 Total: -1.00 -72.91 255.31 1.16 -71.75 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.10 Total: 13.44 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 4.74 Total: 15.46 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -6.65 Total: -103.71 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.05 Total: -40.09 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -72.91 1.16 -71.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219895403.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.709 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds