Wall clock time and date at job start Thu Apr 9 2020 11:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 119.99808 * 2 1 4 4 O 1.21273 * 120.00221 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99842 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.49982 * 300.06808 * 5 3 2 7 7 C 1.53045 * 109.49490 * 180.02562 * 5 3 2 8 8 C 1.53044 * 109.53559 * 178.68551 * 7 5 3 9 9 C 1.53190 * 109.31538 * 61.36321 * 8 7 5 10 10 N 1.46928 * 108.89085 * 305.29623 * 9 8 7 11 11 C 1.36941 * 120.62869 * 233.67699 * 10 9 8 12 12 H 1.08001 * 119.99573 * 27.39329 * 11 10 9 13 13 C 1.38804 * 120.00378 * 207.38960 * 11 10 9 14 14 N 1.31624 * 120.00025 * 17.26718 * 13 11 10 15 15 Si 1.86801 * 120.00311 * 197.26803 * 13 11 10 16 16 H 1.48490 * 109.47145 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46826 * 120.00101 * 15 13 11 18 18 H 1.48498 * 109.47107 * 239.99663 * 15 13 11 19 19 C 1.47201 * 118.56064 * 53.53885 * 10 9 8 20 20 H 1.09004 * 109.46749 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46791 * 299.99426 * 1 2 3 22 22 H 1.08995 * 109.47070 * 59.99306 * 1 2 3 23 23 H 0.96997 * 120.00171 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.45895 * 58.66617 * 7 5 3 25 25 H 1.08996 * 109.45961 * 298.70350 * 7 5 3 26 26 H 1.09007 * 109.49718 * 301.41406 * 8 7 5 27 27 H 1.09003 * 109.52559 * 181.33330 * 8 7 5 28 28 H 1.08998 * 109.58570 * 65.15218 * 9 8 7 29 29 H 1.09001 * 109.59111 * 185.43782 * 9 8 7 30 30 H 0.96996 * 120.00327 * 179.97438 * 14 13 11 31 31 H 1.08993 * 109.53783 * 186.67345 * 19 10 9 32 32 H 1.09001 * 109.67476 * 66.36192 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0101 0.6522 0.8884 7 6 4.1566 2.6099 0.0002 8 6 5.6867 2.6111 0.0327 9 6 6.2207 1.9098 -1.2202 10 7 5.6228 0.5705 -1.3070 11 6 6.4142 -0.5401 -1.4317 12 1 7.4207 -0.5326 -1.0401 13 6 5.9228 -1.6754 -2.0613 14 7 4.8556 -1.5933 -2.8272 15 14 6.7761 -3.3197 -1.8215 16 1 7.9442 -3.1446 -0.9215 17 1 5.8254 -4.2872 -1.2171 18 1 7.2374 -3.8343 -3.1359 19 6 4.1567 0.4495 -1.2539 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.9500 -0.8400 -0.0004 24 1 3.7743 3.1300 0.8785 25 1 3.8122 3.1176 -0.9007 26 1 6.0322 2.0820 0.9209 27 1 6.0498 3.6386 0.0571 28 1 5.9526 2.4877 -2.1047 29 1 7.3053 1.8223 -1.1559 30 1 4.5124 -2.3866 -3.2675 31 1 3.8792 -0.6036 -1.2106 32 1 3.7184 0.9068 -2.1410 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225773579.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:03 Heat of formation + Delta-G solvation = -49.425861 kcal Electronic energy + Delta-G solvation = -14750.694738 eV Core-core repulsion = 12324.405452 eV Total energy + Delta-G solvation = -2426.289286 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.99907 -38.59641 -35.60500 -34.90884 -32.56129 -31.65396 -27.76140 -27.19070 -24.39275 -23.78482 -21.56662 -20.63003 -18.82912 -18.03123 -17.01145 -16.76285 -16.16231 -15.66199 -15.27512 -14.99169 -14.70206 -14.20980 -14.11100 -13.72208 -13.35515 -13.07499 -12.91748 -12.61484 -12.30002 -12.17996 -11.97032 -11.63412 -11.60075 -11.19942 -10.73844 -10.56588 -10.08970 -8.71327 -7.87460 -5.33138 1.48823 1.52529 1.62635 1.63534 2.37940 2.53543 3.27226 3.59239 3.95568 3.98638 4.15033 4.35953 4.45376 4.56539 4.60230 4.63405 4.81725 4.90459 5.00965 5.12064 5.19969 5.23277 5.27949 5.47891 5.49206 5.64400 5.67843 6.37949 6.52302 7.12814 7.24584 7.81778 8.36715 9.19772 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.027751 B = 0.011544 C = 0.008690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.727486 B = 2424.927904 C = 3221.483237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.728 5.728 3 C 0.522 3.478 4 O -0.584 6.584 5 C -0.126 4.126 6 H 0.100 0.900 7 C -0.085 4.085 8 C -0.121 4.121 9 C 0.135 3.865 10 N -0.609 5.609 11 C -0.263 4.263 12 H 0.070 0.930 13 C -0.046 4.046 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.297 1.297 19 C 0.199 3.801 20 H 0.107 0.893 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.412 0.588 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.009 0.991 29 H 0.060 0.940 30 H 0.252 0.748 31 H 0.075 0.925 32 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 1.553 7.054 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.379 5.379 3 C 0.309 3.691 4 O -0.465 6.465 5 C -0.148 4.148 6 H 0.118 0.882 7 C -0.123 4.123 8 C -0.160 4.160 9 C 0.009 3.991 10 N -0.332 5.332 11 C -0.393 4.393 12 H 0.088 0.912 13 C -0.242 4.242 14 N -0.580 5.580 15 Si 0.795 3.205 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.224 1.224 19 C 0.072 3.928 20 H 0.126 0.874 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.247 0.753 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.027 0.973 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -4.304 2.159 6.964 8.466 hybrid contribution 0.401 -1.237 -0.428 1.369 sum -3.902 0.922 6.536 7.668 Atomic orbital electron populations 1.21675 0.78617 1.04062 1.01471 1.45898 1.08650 1.08758 1.74593 1.20914 0.90556 0.83497 0.74140 1.90589 1.71272 1.32631 1.51976 1.21981 0.90074 1.00132 1.02652 0.88198 1.21161 0.95966 0.93718 1.01466 1.21919 0.94471 1.00888 0.98722 1.21146 0.96989 0.85683 0.95238 1.44360 1.01704 1.02049 1.85064 1.19575 0.97930 0.91540 1.30257 0.91189 1.25767 0.99414 1.02337 0.96644 1.70187 1.27013 1.28722 1.32078 0.85215 0.78227 0.80002 0.77009 1.19234 1.21097 1.22409 1.20434 0.83358 0.98806 0.90166 0.87445 0.92303 0.93545 0.75275 0.91441 0.93753 0.91681 0.89647 0.97257 0.92133 0.93887 0.90709 0.99437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.08 10.70 127.77 1.37 3.45 16 2 N -0.73 -22.53 5.62 -484.53 -2.72 -25.26 16 3 C 0.52 19.69 7.16 87.66 0.63 20.31 16 4 O -0.58 -24.94 15.98 -3.01 -0.05 -24.99 16 5 C -0.13 -4.83 2.68 -11.46 -0.03 -4.86 16 6 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 7 C -0.08 -3.08 4.46 30.62 0.14 -2.94 16 8 C -0.12 -4.07 6.08 30.67 0.19 -3.89 16 9 C 0.13 5.58 6.51 86.36 0.56 6.14 16 10 N -0.61 -29.99 3.01 -698.40 -2.10 -32.09 16 11 C -0.26 -13.95 9.59 84.03 0.81 -13.14 16 12 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 13 C -0.05 -2.46 4.92 84.86 0.42 -2.04 16 14 N -0.93 -52.71 11.18 21.65 0.24 -52.47 16 15 Si 0.97 42.67 29.59 68.60 2.03 44.70 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 19 C 0.20 9.35 4.47 86.31 0.39 9.73 16 20 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.41 11.82 8.38 -92.71 -0.78 11.04 16 24 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 25 H 0.04 1.74 8.13 -2.39 -0.02 1.72 16 26 H 0.06 2.12 8.14 -2.38 -0.02 2.11 16 27 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 30 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.07 3.74 5.64 -2.39 -0.01 3.72 16 32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 Total: -1.00 -64.52 262.74 2.18 -62.34 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.32 Total: 15.00 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 4.46 Total: 12.77 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -4.58 Total: -109.82 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -64.52 2.18 -62.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225773579.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.916 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds