Wall clock time and date at job start Thu Apr 9 2020 11:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36930 * 120.00539 * 2 1 4 4 H 1.07995 * 120.00584 * 202.11659 * 3 2 1 5 5 C 1.38816 * 119.99756 * 22.11614 * 3 2 1 6 6 N 1.31624 * 119.99892 * 11.27996 * 5 3 2 7 7 Si 1.86793 * 120.00143 * 191.28348 * 5 3 2 8 8 H 1.48500 * 109.47138 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47612 * 119.99706 * 7 5 3 10 10 H 1.48507 * 109.47340 * 239.99916 * 7 5 3 11 11 C 1.46504 * 119.99808 * 180.02562 * 2 1 3 12 12 C 1.50696 * 109.47090 * 270.00087 * 11 2 1 13 13 O 1.34635 * 125.85512 * 270.33330 * 12 11 2 14 14 C 1.34266 * 109.53684 * 180.15370 * 13 12 11 15 15 C 1.34477 * 108.57997 * 359.56191 * 14 13 12 16 16 C 1.35031 * 125.85578 * 89.99986 * 12 11 2 17 17 S 1.76202 * 126.63702 * 0.02562 * 16 12 11 18 18 H 1.09005 * 109.47084 * 274.53340 * 1 2 3 19 19 H 1.08996 * 109.47190 * 34.53044 * 1 2 3 20 20 H 1.09001 * 109.47213 * 154.53684 * 1 2 3 21 21 H 0.97004 * 119.99977 * 180.02562 * 6 5 3 22 22 H 1.08995 * 109.47347 * 150.00183 * 11 2 1 23 23 H 1.08998 * 109.47004 * 29.99815 * 11 2 1 24 24 H 1.08003 * 125.70834 * 179.82400 * 14 13 12 25 25 H 1.07995 * 126.56669 * 180.26885 * 15 14 13 26 26 H 1.34498 * 102.99701 * 269.97340 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1701 1.2202 -0.3521 5 6 1.5323 2.3438 0.4526 6 7 0.3798 2.2713 1.0842 7 14 2.3370 4.0048 0.1653 8 1 3.6179 3.8151 -0.5617 9 1 1.4312 4.8608 -0.6421 10 1 2.6022 4.6591 1.4719 11 6 2.1974 -1.2688 -0.0006 12 6 2.4486 -1.7045 1.4200 13 8 3.5220 -1.3817 2.1658 14 6 3.4127 -1.9474 3.3786 15 6 2.2580 -2.6348 3.4282 16 6 1.6326 -2.4803 2.1654 17 16 0.0892 -3.1677 1.6651 18 1 -0.3633 0.0812 1.0245 19 1 -0.3633 0.8466 -0.5825 20 1 -0.3634 -0.9278 -0.4418 21 1 -0.0519 3.0805 1.4001 22 1 3.1498 -1.1383 -0.5143 23 1 1.6083 -2.0282 -0.5147 24 1 4.1299 -1.8610 4.1814 25 1 1.8794 -3.1969 4.2691 26 1 -0.7939 -2.2162 2.0166 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237190839.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:36 Heat of formation + Delta-G solvation = 22.715022 kcal Electronic energy + Delta-G solvation = -12361.196247 eV Core-core repulsion = 10147.236338 eV Total energy + Delta-G solvation = -2213.959908 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.35275 -37.65790 -34.10721 -33.51908 -31.07443 -28.13886 -27.22609 -23.55562 -22.89670 -21.59851 -19.03807 -18.66823 -17.74282 -16.99416 -16.71441 -15.69909 -15.50905 -15.21747 -14.44869 -14.25008 -13.80925 -13.55582 -12.98247 -12.89585 -12.58700 -12.33419 -12.28679 -12.10909 -11.90125 -10.77304 -10.64504 -9.43454 -9.06674 -8.92988 -7.94573 -5.44845 0.48407 0.95747 1.42650 1.42992 1.44122 1.55039 2.01006 2.34009 2.45044 3.24075 3.65322 3.94012 4.06808 4.35897 4.72983 4.77448 4.78581 4.85373 5.16267 5.22791 5.51260 5.52853 5.60339 6.16898 6.22264 7.01905 7.68965 8.12598 9.08561 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.036904 B = 0.010874 C = 0.009489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.538913 B = 2574.235803 C = 2950.170992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.597 5.597 3 C -0.268 4.268 4 H 0.079 0.921 5 C -0.051 4.051 6 N -0.939 5.939 7 Si 0.974 3.026 8 H -0.261 1.261 9 H -0.287 1.287 10 H -0.294 1.294 11 C 0.204 3.796 12 C 0.044 3.956 13 O -0.187 6.187 14 C -0.055 4.055 15 C -0.195 4.195 16 C -0.236 4.236 17 S -0.063 6.063 18 H -0.009 1.009 19 H 0.024 0.976 20 H 0.040 0.960 21 H 0.249 0.751 22 H 0.077 0.923 23 H 0.110 0.890 24 H 0.240 0.760 25 H 0.172 0.828 26 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -9.178 1.898 10.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.318 5.318 3 C -0.398 4.398 4 H 0.097 0.903 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.802 3.198 8 H -0.185 1.185 9 H -0.214 1.214 10 H -0.222 1.222 11 C 0.077 3.923 12 C -0.015 4.015 13 O -0.082 6.082 14 C -0.122 4.122 15 C -0.216 4.216 16 C -0.351 4.351 17 S 0.092 5.908 18 H 0.010 0.990 19 H 0.043 0.957 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.095 0.905 23 H 0.128 0.872 24 H 0.256 0.744 25 H 0.189 0.811 26 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 2.997 -9.385 1.487 9.963 hybrid contribution 0.164 2.250 1.141 2.528 sum 3.162 -7.135 2.629 8.235 Atomic orbital electron populations 1.20628 0.82051 0.96764 0.97015 1.44381 1.02405 1.01056 1.83980 1.19706 0.98527 0.85967 1.35591 0.90328 1.25910 0.98246 1.02330 0.98122 1.70269 1.19036 1.27652 1.41523 0.85094 0.78351 0.79345 0.77014 1.18540 1.21385 1.22157 1.20065 0.98166 0.88547 0.85518 1.25318 0.85168 0.93054 0.97944 1.84193 1.41011 1.59150 1.23877 1.24732 1.01498 0.98576 0.87425 1.22190 0.96390 1.05052 0.97973 1.21564 1.01539 1.12675 0.99314 1.84820 0.97616 1.26215 1.82115 0.99035 0.95740 0.94149 0.94185 0.90514 0.87220 0.74361 0.81072 0.98643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.96 9.01 127.77 1.15 10.11 15 2 N -0.60 -29.91 2.91 -731.33 -2.13 -32.04 15 3 C -0.27 -14.66 9.68 84.04 0.81 -13.85 15 4 H 0.08 4.15 7.84 -2.91 -0.02 4.13 15 5 C -0.05 -2.86 5.13 84.86 0.44 -2.42 15 6 N -0.94 -55.98 10.57 21.65 0.23 -55.75 15 7 Si 0.97 45.03 29.57 68.60 2.03 47.05 15 8 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 9 H -0.29 -13.15 7.11 99.48 0.71 -12.45 15 10 H -0.29 -13.73 7.11 99.48 0.71 -13.03 15 11 C 0.20 8.37 6.04 85.63 0.52 8.88 15 12 C 0.04 1.80 6.94 24.95 0.17 1.97 15 13 O -0.19 -7.49 10.66 -5.40 -0.06 -7.55 15 14 C -0.05 -1.71 12.07 66.96 0.81 -0.90 15 15 C -0.19 -6.35 10.90 22.28 0.24 -6.11 15 16 C -0.24 -8.97 6.43 22.40 0.14 -8.83 15 17 S -0.06 -2.13 25.64 -56.49 -1.45 -3.58 15 18 H -0.01 -0.49 7.41 -2.38 -0.02 -0.50 15 19 H 0.02 1.30 7.19 -2.39 -0.02 1.28 15 20 H 0.04 1.70 7.84 -2.39 -0.02 1.69 15 21 H 0.25 14.41 8.31 -92.70 -0.77 13.64 15 22 H 0.08 2.95 8.03 -2.39 -0.02 2.93 15 23 H 0.11 3.93 7.52 -2.39 -0.02 3.91 15 24 H 0.24 4.92 8.06 -2.91 -0.02 4.89 15 25 H 0.17 4.50 8.06 -2.91 -0.02 4.47 15 26 H 0.05 1.87 9.07 73.35 0.67 2.53 15 Total: -1.00 -64.92 246.19 4.76 -60.15 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 1.86 Total: 2.85 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.29 Total: -11.14 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -1.90 Total: -87.79 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.06 Total: -7.55 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -2.13 SS G_CDS: -1.45 Total: -3.58 kcal Total: -64.92 4.76 -60.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237190839.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.870 kcal (2) G-P(sol) polarization free energy of solvation -64.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds