Wall clock time and date at job start Thu Apr 9 2020 11:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46435 * 2 1 4 4 C 1.53034 * 109.46006 * 240.03013 * 2 1 3 5 5 C 1.53117 * 109.27588 * 180.80661 * 4 2 1 6 6 H 1.08997 * 109.57613 * 297.71642 * 5 4 2 7 7 N 1.46901 * 109.52229 * 177.55843 * 5 4 2 8 8 C 1.46905 * 110.99870 * 155.31711 * 7 5 4 9 9 C 1.52993 * 109.47039 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47393 * 180.02562 * 9 8 7 11 11 H 1.08010 * 119.99765 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00736 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99548 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00627 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47183 * 59.99833 * 14 12 10 16 16 H 1.48504 * 109.47670 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47006 * 300.00098 * 14 12 10 18 18 C 1.53120 * 109.16304 * 57.65529 * 5 4 2 19 19 C 1.53033 * 109.27800 * 302.34876 * 18 5 4 20 20 N 1.46842 * 109.45888 * 119.97888 * 2 1 3 21 21 H 1.09001 * 109.46857 * 300.02644 * 1 2 3 22 22 H 1.08997 * 109.46843 * 60.01829 * 1 2 3 23 23 H 1.08995 * 109.47297 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.50395 * 60.86790 * 4 2 1 25 25 H 1.09002 * 109.50740 * 300.74853 * 4 2 1 26 26 H 1.00901 * 111.00067 * 279.26886 * 7 5 4 27 27 H 1.09001 * 109.46798 * 300.00327 * 8 7 5 28 28 H 1.08998 * 109.46961 * 60.00043 * 8 7 5 29 29 H 1.09001 * 109.47393 * 299.99719 * 9 8 7 30 30 H 1.08998 * 109.47408 * 60.00073 * 9 8 7 31 31 H 0.97002 * 119.99722 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.50157 * 62.28432 * 18 5 4 33 33 H 1.08991 * 109.50643 * 182.40510 * 18 5 4 34 34 H 1.09002 * 109.46433 * 179.19627 * 19 18 5 35 35 H 1.09006 * 109.46372 * 299.17065 * 19 18 5 36 36 H 1.00902 * 111.00371 * 57.66008 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7360 -1.2356 6 1 3.9466 0.2867 -1.2677 7 7 4.0655 -1.4775 -2.4033 8 6 5.4237 -1.0485 -2.7628 9 6 5.9032 -1.8407 -3.9806 10 6 7.2968 -1.4010 -4.3491 11 1 7.7909 -0.6329 -3.7725 12 6 7.9411 -1.9792 -5.4222 13 7 7.3396 -2.9149 -6.1240 14 14 9.6681 -1.4337 -5.8793 15 1 10.5837 -1.6795 -4.7363 16 1 10.1337 -2.2027 -7.0613 17 1 9.6598 0.0154 -6.2041 18 6 4.0548 -1.4189 0.0466 19 6 3.4864 -0.6779 1.2590 20 7 2.0192 -0.6918 1.1993 21 1 -0.3633 0.5143 0.8898 22 1 -0.3633 0.5135 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.6895 -0.1980 -2.1400 25 1 1.6659 -1.7446 -1.2578 26 1 4.0319 -2.4727 -2.2404 27 1 5.4176 0.0152 -3.0011 28 1 6.0957 -1.2290 -1.9238 29 1 5.9093 -2.9044 -3.7428 30 1 5.2311 -1.6598 -4.8194 31 1 7.7930 -3.3219 -6.8788 32 1 3.7124 -2.4536 0.0593 33 1 5.1438 -1.3948 0.0831 34 1 3.8175 -1.1702 2.1735 35 1 3.8402 0.3532 1.2532 36 1 1.6646 -1.6355 1.2424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246277059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:41 Heat of formation + Delta-G solvation = -24.923107 kcal Electronic energy + Delta-G solvation = -14220.693615 eV Core-core repulsion = 11931.299942 eV Total energy + Delta-G solvation = -2289.393673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25400 -35.62837 -33.09398 -32.24905 -30.73528 -27.88603 -27.02495 -24.09669 -22.58691 -21.26450 -20.75387 -20.11994 -16.33846 -15.87566 -15.19756 -14.77648 -14.51984 -14.34273 -14.14503 -13.79449 -12.82920 -12.72743 -12.50003 -12.10538 -11.99998 -11.61286 -11.48787 -11.13331 -10.98882 -10.92997 -10.69004 -10.55379 -10.46412 -9.99671 -9.38469 -9.18195 -8.45413 -8.35030 -7.77189 -6.00167 -4.03022 3.32945 3.37264 3.39641 4.15442 4.41517 4.57512 4.81098 5.00799 5.03683 5.23307 5.28584 5.35606 5.41536 5.49607 5.60028 5.73088 5.81586 5.87051 5.96701 6.04405 6.12246 6.22538 6.28965 6.37416 6.45367 6.96952 6.98779 7.30104 7.49365 7.72150 7.82165 7.95290 8.07868 8.42940 9.03976 9.60763 11.11261 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065728 B = 0.005172 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.898431 B = 5412.427611 C = 5613.644174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.078 0.922 4 C -0.137 4.137 5 C 0.087 3.913 6 H 0.072 0.928 7 N -0.686 5.686 8 C 0.067 3.933 9 C 0.025 3.975 10 C -0.523 4.523 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.187 4.187 19 C 0.062 3.938 20 N -0.683 5.683 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.335 0.665 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.013 0.987 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.570 3.784 12.881 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 H 0.097 0.903 4 C -0.177 4.177 5 C -0.024 4.024 6 H 0.090 0.910 7 N -0.315 5.315 8 C -0.062 4.062 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.228 4.228 19 C -0.069 4.069 20 N -0.312 5.312 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.152 0.848 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.915 4.649 12.660 17.350 hybrid contribution 1.855 -0.909 -0.373 2.099 sum -9.061 3.740 12.287 15.718 Atomic orbital electron populations 1.21780 0.94443 1.01894 1.01910 1.21599 0.95087 0.98381 0.87891 0.90340 1.22289 0.95495 1.01078 0.98858 1.21578 0.94536 0.98096 0.88154 0.90954 1.60694 1.26276 1.09085 1.35489 1.22171 0.85472 1.00053 0.98462 1.19062 0.95563 0.94692 0.91894 1.21139 1.00224 1.21324 1.13458 0.92851 1.25002 0.98018 0.95046 0.96258 1.69969 1.37677 1.26222 1.19418 0.86641 0.84620 0.78743 0.77882 1.20290 1.21232 1.20207 1.23026 1.01935 1.00226 0.97656 1.21939 0.87345 1.00712 0.96858 1.60769 1.08701 1.22184 1.39545 0.92120 0.92093 0.92853 0.90873 0.92159 0.84759 0.92499 0.96710 0.96906 0.95708 0.92927 0.92038 0.91375 0.91020 0.91051 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.47 37.16 0.35 -0.94 16 2 C 0.08 0.87 3.03 -67.72 -0.21 0.66 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.14 -1.72 4.97 -26.65 -0.13 -1.85 16 5 C 0.09 1.27 2.53 -67.59 -0.17 1.10 16 6 H 0.07 1.12 7.80 -51.93 -0.41 0.71 16 7 N -0.69 -12.41 6.25 -106.60 -0.67 -13.08 16 8 C 0.07 1.43 5.42 -3.82 -0.02 1.41 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 10 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 11 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.19 -2.39 5.33 -26.65 -0.14 -2.54 16 19 C 0.06 0.68 6.55 -3.84 -0.03 0.65 16 20 N -0.68 -7.21 6.50 -106.76 -0.69 -7.91 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.33 5.93 8.45 -39.29 -0.33 5.60 16 27 H 0.06 1.23 8.06 -51.93 -0.42 0.82 16 28 H 0.01 0.31 7.49 -51.93 -0.39 -0.08 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.34 3.30 8.79 -39.29 -0.35 2.96 16 LS Contribution 287.70 15.07 4.34 4.34 Total: -1.00 -29.73 287.70 -8.68 -38.41 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.47 Total: 2.65 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -0.90 Total: -14.75 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.62 Total: -47.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.73 -8.68 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246277059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.484 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds