Wall clock time and date at job start Thu Apr 9 2020 11:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46435 * 2 1 4 4 C 1.53034 * 109.46006 * 240.03013 * 2 1 3 5 5 C 1.53117 * 109.27588 * 180.80661 * 4 2 1 6 6 H 1.08997 * 109.57613 * 297.71642 * 5 4 2 7 7 N 1.46901 * 109.52229 * 177.55843 * 5 4 2 8 8 C 1.46905 * 110.99870 * 155.31711 * 7 5 4 9 9 C 1.52993 * 109.47039 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47393 * 180.02562 * 9 8 7 11 11 H 1.08010 * 119.99765 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00736 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99548 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00627 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47183 * 59.99833 * 14 12 10 16 16 H 1.48504 * 109.47670 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47006 * 300.00098 * 14 12 10 18 18 C 1.53120 * 109.16304 * 57.65529 * 5 4 2 19 19 C 1.53033 * 109.27800 * 302.34876 * 18 5 4 20 20 N 1.46842 * 109.45888 * 119.97888 * 2 1 3 21 21 H 1.09001 * 109.46857 * 300.02644 * 1 2 3 22 22 H 1.08997 * 109.46843 * 60.01829 * 1 2 3 23 23 H 1.08995 * 109.47297 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.50395 * 60.86790 * 4 2 1 25 25 H 1.09002 * 109.50740 * 300.74853 * 4 2 1 26 26 H 1.00901 * 111.00067 * 279.26886 * 7 5 4 27 27 H 1.09001 * 109.46798 * 300.00327 * 8 7 5 28 28 H 1.08998 * 109.46961 * 60.00043 * 8 7 5 29 29 H 1.09001 * 109.47393 * 299.99719 * 9 8 7 30 30 H 1.08998 * 109.47408 * 60.00073 * 9 8 7 31 31 H 0.97002 * 119.99722 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.50157 * 62.28432 * 18 5 4 33 33 H 1.08991 * 109.50643 * 182.40510 * 18 5 4 34 34 H 1.09002 * 109.46433 * 179.19627 * 19 18 5 35 35 H 1.09006 * 109.46372 * 299.17065 * 19 18 5 36 36 H 1.00902 * 111.00371 * 57.66008 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5709 -0.7360 -1.2356 6 1 3.9466 0.2867 -1.2677 7 7 4.0655 -1.4775 -2.4033 8 6 5.4237 -1.0485 -2.7628 9 6 5.9032 -1.8407 -3.9806 10 6 7.2968 -1.4010 -4.3491 11 1 7.7909 -0.6329 -3.7725 12 6 7.9411 -1.9792 -5.4222 13 7 7.3396 -2.9149 -6.1240 14 14 9.6681 -1.4337 -5.8793 15 1 10.5837 -1.6795 -4.7363 16 1 10.1337 -2.2027 -7.0613 17 1 9.6598 0.0154 -6.2041 18 6 4.0548 -1.4189 0.0466 19 6 3.4864 -0.6779 1.2590 20 7 2.0192 -0.6918 1.1993 21 1 -0.3633 0.5143 0.8898 22 1 -0.3633 0.5135 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 1.6895 -0.1980 -2.1400 25 1 1.6659 -1.7446 -1.2578 26 1 4.0319 -2.4727 -2.2404 27 1 5.4176 0.0152 -3.0011 28 1 6.0957 -1.2290 -1.9238 29 1 5.9093 -2.9044 -3.7428 30 1 5.2311 -1.6598 -4.8194 31 1 7.7930 -3.3219 -6.8788 32 1 3.7124 -2.4536 0.0593 33 1 5.1438 -1.3948 0.0831 34 1 3.8175 -1.1702 2.1735 35 1 3.8402 0.3532 1.2532 36 1 1.6646 -1.6355 1.2424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246277059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:41 Heat of formation + Delta-G solvation = -46.256269 kcal Electronic energy + Delta-G solvation = -14221.618690 eV Core-core repulsion = 11931.299942 eV Total energy + Delta-G solvation = -2290.318748 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30353 -37.10632 -35.08095 -33.22040 -32.35339 -29.53409 -27.92787 -26.02073 -23.62370 -22.69919 -22.12739 -21.32341 -18.53674 -17.07264 -16.47682 -16.10616 -15.99111 -15.82276 -15.25361 -14.93028 -14.42257 -14.29682 -13.75739 -13.39299 -13.17954 -12.91719 -12.85014 -12.66241 -12.45123 -12.37583 -12.11251 -11.89482 -11.66933 -11.52929 -11.41319 -11.21896 -10.58768 -9.43677 -9.18737 -8.22722 -6.34970 1.38812 1.42255 1.50336 2.38714 3.10516 3.18244 3.39071 3.73409 3.95201 4.09548 4.23319 4.31324 4.40840 4.44241 4.52156 4.62597 4.67309 4.84774 4.89955 4.99450 5.00853 5.04667 5.11500 5.22035 5.29327 5.37551 5.41620 5.63342 5.75730 6.09867 6.11518 6.25337 6.48754 6.51212 6.81781 7.34602 8.89306 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065728 B = 0.005172 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.898431 B = 5412.427611 C = 5613.644174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.074 0.926 4 C -0.129 4.129 5 C 0.085 3.915 6 H 0.063 0.937 7 N -0.693 5.693 8 C 0.087 3.913 9 C 0.032 3.968 10 C -0.548 4.548 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.267 1.267 18 C -0.179 4.179 19 C 0.068 3.932 20 N -0.680 5.680 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.337 0.663 27 H 0.053 0.947 28 H 0.018 0.982 29 H -0.010 1.010 30 H -0.007 1.007 31 H 0.265 0.735 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.461 4.444 14.087 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 H 0.092 0.908 4 C -0.169 4.169 5 C -0.025 4.025 6 H 0.082 0.918 7 N -0.322 5.322 8 C -0.042 4.042 9 C -0.005 4.005 10 C -0.586 4.586 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.220 4.220 19 C -0.063 4.063 20 N -0.309 5.309 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.154 0.846 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.009 0.991 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.827 5.315 13.891 18.396 hybrid contribution 1.764 -1.135 -0.747 2.226 sum -9.063 4.180 13.144 16.504 Atomic orbital electron populations 1.21739 0.92912 1.02435 1.02447 1.21569 0.96235 0.97800 0.86853 0.90763 1.22231 0.93666 1.01369 0.99630 1.21673 0.95918 0.97198 0.87697 0.91840 1.60625 1.24093 1.09545 1.37975 1.21759 0.87332 0.98784 0.96344 1.18914 0.94629 0.94056 0.92930 1.21576 1.01314 1.21702 1.14018 0.92215 1.25989 1.02777 0.94874 0.96020 1.70107 1.39737 1.27376 1.19947 0.85457 0.78825 0.78625 0.77869 1.19068 1.20656 1.19150 1.22935 1.01113 1.00484 0.97509 1.21915 0.87482 1.00454 0.96415 1.60781 1.08329 1.22707 1.39102 0.91496 0.91667 0.92320 0.91830 0.91995 0.84570 0.92823 0.96358 0.99130 0.98890 0.92671 0.91678 0.92665 0.89456 0.91229 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.47 71.98 0.68 -1.51 16 2 C 0.09 1.68 3.03 44.94 0.14 1.82 16 3 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.13 -3.08 4.97 30.64 0.15 -2.93 16 5 C 0.09 2.42 2.53 44.99 0.11 2.54 16 6 H 0.06 1.93 7.80 -2.39 -0.02 1.91 16 7 N -0.69 -25.21 6.25 -491.16 -3.07 -28.28 16 8 C 0.09 3.76 5.42 86.30 0.47 4.23 16 9 C 0.03 1.76 5.23 29.85 0.16 1.92 16 10 C -0.55 -31.89 9.11 25.60 0.23 -31.65 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 12 C 0.00 0.09 5.46 84.65 0.46 0.55 16 13 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 14 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 C -0.18 -4.36 5.33 30.65 0.16 -4.20 16 19 C 0.07 1.34 6.55 86.32 0.57 1.91 16 20 N -0.68 -12.77 6.50 -491.69 -3.20 -15.97 16 21 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.34 12.02 8.45 -89.69 -0.76 11.26 16 27 H 0.05 2.35 8.06 -2.39 -0.02 2.33 16 28 H 0.02 0.78 7.49 -2.39 -0.02 0.76 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.05 1.49 7.52 -2.39 -0.02 1.47 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.34 5.84 8.79 -89.69 -0.79 5.05 16 Total: -1.00 -63.52 287.70 -1.33 -64.85 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.51 Total: 17.42 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.13 Total: -27.33 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -5.98 Total: -101.58 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.52 -1.33 -64.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246277059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.592 kcal (2) G-P(sol) polarization free energy of solvation -63.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds