Wall clock time and date at job start Thu Apr 9 2020 11:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46152 * 2 1 4 4 C 1.53039 * 109.46350 * 119.96948 * 2 1 3 5 5 C 1.53123 * 109.31189 * 179.16930 * 4 2 1 6 6 H 1.09000 * 109.52057 * 62.27355 * 5 4 2 7 7 N 1.46898 * 109.52408 * 182.46200 * 5 4 2 8 8 C 1.46896 * 111.00222 * 205.00056 * 7 5 4 9 9 C 1.53001 * 109.47369 * 180.02562 * 8 7 5 10 10 C 1.50693 * 109.47303 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00145 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99950 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00438 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99954 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46837 * 60.00193 * 14 12 10 16 16 H 1.48496 * 109.47153 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47045 * 300.00338 * 14 12 10 18 18 C 1.53129 * 109.15931 * 302.40768 * 5 4 2 19 19 C 1.53036 * 109.30712 * 57.59477 * 18 5 4 20 20 N 1.46842 * 109.46062 * 240.02126 * 2 1 3 21 21 H 1.08996 * 109.47612 * 300.02514 * 1 2 3 22 22 H 1.08997 * 109.46830 * 60.02914 * 1 2 3 23 23 H 1.09004 * 109.46743 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.50563 * 299.13262 * 4 2 1 25 25 H 1.09003 * 109.50107 * 59.21244 * 4 2 1 26 26 H 1.00899 * 110.99986 * 328.96095 * 7 5 4 27 27 H 1.09003 * 109.46765 * 299.99834 * 8 7 5 28 28 H 1.08999 * 109.47141 * 59.99950 * 8 7 5 29 29 H 1.08998 * 109.47141 * 300.00292 * 9 8 7 30 30 H 1.09005 * 109.46861 * 60.00094 * 9 8 7 31 31 H 0.97002 * 120.00199 * 179.97438 * 13 12 10 32 32 H 1.09000 * 109.46579 * 297.65836 * 18 5 4 33 33 H 1.08997 * 109.53656 * 177.57437 * 18 5 4 34 34 H 1.09001 * 109.45883 * 180.82826 * 19 18 5 35 35 H 1.08995 * 109.46584 * 60.85899 * 19 18 5 36 36 H 1.00903 * 110.99924 * 54.14783 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5710 -0.7370 1.2361 6 1 3.9463 0.2859 1.2680 7 7 4.0648 -1.4790 2.4037 8 6 5.4202 -1.0456 2.7683 9 6 5.8995 -1.8395 3.9853 10 6 7.2901 -1.3953 4.3589 11 1 7.7828 -0.6236 3.7860 12 6 7.9332 -1.9733 5.4328 13 7 7.3332 -2.9127 6.1308 14 14 9.6569 -1.4222 5.8964 15 1 9.6420 0.0261 6.2243 16 1 10.1221 -2.1928 7.0775 17 1 10.5768 -1.6621 4.7557 18 6 4.0547 -1.4190 -0.0468 19 6 3.4864 -0.6778 -1.2591 20 7 2.0192 -0.6918 -1.1993 21 1 -0.3634 0.5142 0.8897 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6896 -0.1980 2.1400 25 1 1.6653 -1.7444 1.2581 26 1 3.4330 -1.3861 3.1849 27 1 6.0955 -1.2219 1.9311 28 1 5.4093 0.0174 3.0089 29 1 5.2242 -1.6638 4.8227 30 1 5.9104 -2.9025 3.7443 31 1 7.7859 -3.3196 6.8861 32 1 3.7123 -2.4537 -0.0594 33 1 5.1438 -1.3955 -0.0836 34 1 3.8173 -1.1701 -2.1736 35 1 3.8403 0.3530 -1.2533 36 1 1.6194 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246277061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:43 Heat of formation + Delta-G solvation = -21.955593 kcal Electronic energy + Delta-G solvation = -14196.695505 eV Core-core repulsion = 11907.430513 eV Total energy + Delta-G solvation = -2289.264992 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.00289 -35.59476 -33.07585 -32.26374 -30.88773 -28.08524 -26.93918 -24.06982 -22.78734 -21.18716 -20.33635 -19.49881 -16.45347 -16.23606 -15.19559 -15.07895 -14.53437 -14.31621 -14.11551 -13.28384 -13.18794 -12.77095 -12.26659 -12.13186 -11.97450 -11.69035 -11.23681 -11.03348 -10.96268 -10.92471 -10.68926 -10.39914 -10.21173 -9.88440 -9.30854 -9.12299 -8.50961 -8.32920 -7.76783 -5.97399 -4.00089 3.34704 3.38962 3.41361 4.08003 4.43470 4.61361 4.81036 4.95916 5.09151 5.30558 5.31785 5.38326 5.49403 5.53146 5.63632 5.74643 5.78537 5.88946 6.02670 6.05743 6.20552 6.33929 6.38544 6.44287 6.62842 6.99563 7.03116 7.31813 7.55142 7.76595 7.86678 8.01321 8.12431 8.46467 9.07021 9.63492 11.14016 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065697 B = 0.005164 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.098822 B = 5421.322109 C = 5632.365743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.034 0.966 4 C -0.113 4.113 5 C 0.086 3.914 6 H 0.032 0.968 7 N -0.687 5.687 8 C 0.067 3.933 9 C 0.025 3.975 10 C -0.522 4.522 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.105 4.105 19 C 0.059 3.941 20 N -0.685 5.685 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.336 0.664 27 H 0.057 0.943 28 H 0.013 0.987 29 H 0.013 0.987 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 6.016 -12.756 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 H 0.052 0.948 4 C -0.151 4.151 5 C -0.025 4.025 6 H 0.050 0.950 7 N -0.317 5.317 8 C -0.061 4.061 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.143 4.143 19 C -0.070 4.070 20 N -0.317 5.317 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.154 0.846 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.120 4.739 -12.666 17.508 hybrid contribution 1.026 2.114 0.490 2.400 sum -10.094 6.853 -12.176 17.236 Atomic orbital electron populations 1.21817 0.94415 1.02633 1.01401 1.21439 0.94968 0.94972 0.91044 0.94839 1.21818 0.95270 1.01905 0.96111 1.21517 0.93563 0.94894 0.92487 0.95025 1.60597 1.04861 1.58548 1.07724 1.22188 0.87507 0.96523 0.99919 1.19064 0.95333 0.95989 0.90822 1.21145 1.00577 1.20993 1.13396 0.92882 1.24996 0.97934 0.95040 0.96330 1.69962 1.37723 1.26066 1.19514 0.86653 0.84749 0.78631 0.77922 1.20323 1.21247 1.20223 1.21576 0.99956 1.00575 0.92224 1.21940 0.87275 0.98480 0.99325 1.60334 1.07541 1.59350 1.04448 0.92151 0.93006 0.91624 0.91961 0.90221 0.84634 0.92443 0.96903 0.96864 0.95631 0.92941 0.90492 0.91614 0.90804 0.95653 0.84538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.43 37.16 0.35 -0.96 16 2 C 0.09 0.95 3.04 -67.73 -0.21 0.74 16 3 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 4 C -0.11 -1.46 4.64 -26.65 -0.12 -1.59 16 5 C 0.09 1.32 2.56 -67.58 -0.17 1.15 16 6 H 0.03 0.51 7.80 -51.93 -0.41 0.11 16 7 N -0.69 -12.75 6.31 -106.59 -0.67 -13.42 16 8 C 0.07 1.46 5.43 -3.83 -0.02 1.44 16 9 C 0.03 0.68 5.23 -27.89 -0.15 0.53 16 10 C -0.52 -15.12 9.11 -34.45 -0.31 -15.43 16 11 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C -0.10 -1.52 5.59 -26.65 -0.15 -1.67 16 19 C 0.06 0.70 6.55 -3.83 -0.03 0.67 16 20 N -0.68 -7.52 6.50 -106.76 -0.69 -8.21 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.34 6.02 8.36 -39.29 -0.33 5.69 16 27 H 0.06 1.26 7.51 -51.93 -0.39 0.87 16 28 H 0.01 0.28 8.06 -51.93 -0.42 -0.14 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.01 7.55 -51.93 -0.39 0.62 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.34 3.00 8.79 -39.29 -0.35 2.65 16 LS Contribution 287.68 15.07 4.34 4.34 Total: -1.00 -30.33 287.68 -8.69 -39.02 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.47 Total: 1.46 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.90 Total: -13.51 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.63 Total: -48.21 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.33 -8.69 -39.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246277061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.067 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds