Wall clock time and date at job start Thu Apr 9 2020 11:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46908 * 110.99742 * 85.00495 * 12 2 1 14 14 H 1.09004 * 109.49807 * 324.99904 * 13 12 2 15 15 C 1.53117 * 109.50316 * 204.92124 * 13 12 2 16 16 C 1.53122 * 109.15925 * 182.44022 * 15 13 12 17 17 C 1.53040 * 109.31049 * 57.59449 * 16 15 13 18 18 H 1.09003 * 109.45781 * 60.85767 * 17 16 15 19 19 C 1.53001 * 109.46400 * 180.82489 * 17 16 15 20 20 N 1.46848 * 109.52168 * 300.84276 * 17 16 15 21 21 C 1.46850 * 111.19903 * 61.73997 * 20 17 16 22 22 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.00897 * 111.00254 * 321.05548 * 12 2 1 27 27 H 1.09000 * 109.52494 * 302.30962 * 15 13 12 28 28 H 1.09003 * 109.52140 * 62.49691 * 15 13 12 29 29 H 1.08996 * 109.47094 * 297.65769 * 16 15 13 30 30 H 1.08998 * 109.53543 * 177.57690 * 16 15 13 31 31 H 1.08997 * 109.46770 * 180.02562 * 19 17 16 32 32 H 1.08999 * 109.46765 * 300.05300 * 19 17 16 33 33 H 1.09000 * 109.46926 * 60.05478 * 19 17 16 34 34 H 1.00896 * 110.99712 * 185.83814 * 20 17 16 35 35 H 1.08999 * 109.46179 * 178.24103 * 21 20 17 36 36 H 1.09004 * 109.45371 * 58.26759 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3469 14 1 1.2578 0.9331 -2.2912 15 6 1.9791 -0.5800 -3.6468 16 6 2.1066 0.3739 -4.8377 17 6 3.4355 1.1271 -4.7428 18 1 4.2597 0.4143 -4.7725 19 6 3.5574 2.0964 -5.9203 20 7 3.4843 1.8794 -3.4826 21 6 3.4120 0.9799 -2.3241 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7164 1.1670 3.4843 26 1 1.4495 -1.4980 -1.4099 27 1 2.7806 -1.3178 -3.6843 28 1 1.0146 -1.0863 -3.6865 29 1 1.2824 1.0870 -4.8220 30 1 2.0769 -0.1962 -5.7662 31 1 4.5040 2.6325 -5.8530 32 1 3.5212 1.5381 -6.8557 33 1 2.7335 2.8095 -5.8906 34 1 4.3089 2.4592 -3.4394 35 1 3.4818 1.5636 -1.4062 36 1 4.2364 0.2679 -2.3653 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246347515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:55 Heat of formation + Delta-G solvation = -34.216804 kcal Electronic energy + Delta-G solvation = -14701.594319 eV Core-core repulsion = 12411.797642 eV Total energy + Delta-G solvation = -2289.796678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.05465 -37.35017 -34.71328 -32.80534 -32.40335 -29.42686 -27.24663 -26.52015 -24.57092 -22.57652 -21.64152 -20.61268 -18.40920 -17.28322 -16.77713 -16.25879 -15.54812 -15.34636 -15.04574 -14.74330 -14.33840 -13.89746 -13.71809 -13.32507 -13.22957 -12.85442 -12.76487 -12.68896 -12.52022 -12.17254 -12.07470 -11.96284 -11.76649 -11.38752 -11.10377 -10.97842 -10.47529 -9.38260 -8.97887 -8.08595 -6.20240 1.43434 1.45383 1.53207 2.44484 3.13039 3.19669 3.74601 3.84688 3.97000 4.05285 4.30221 4.48147 4.51088 4.69009 4.73157 4.78668 4.86260 4.88634 4.94134 4.96777 5.05775 5.07791 5.18073 5.27535 5.32249 5.42213 5.49355 5.69117 5.82766 6.11489 6.29297 6.52583 6.67611 6.85333 6.95861 7.49809 8.96953 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056303 B = 0.006712 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.193195 B = 4170.916431 C = 4279.378969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.684 5.684 13 C 0.092 3.908 14 H 0.019 0.981 15 C -0.116 4.116 16 C -0.105 4.105 17 C 0.078 3.922 18 H 0.037 0.963 19 C -0.138 4.138 20 N -0.692 5.692 21 C 0.083 3.917 22 H 0.033 0.967 23 H 0.061 0.939 24 H 0.020 0.980 25 H 0.261 0.739 26 H 0.333 0.667 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.348 0.652 35 H 0.044 0.956 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 -0.276 -14.737 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.110 3.890 3 H 0.017 0.983 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.314 5.314 13 C -0.018 4.018 14 H 0.037 0.963 15 C -0.154 4.154 16 C -0.143 4.143 17 C -0.031 4.031 18 H 0.055 0.945 19 C -0.195 4.195 20 N -0.325 5.325 21 C -0.047 4.047 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.151 0.849 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.063 0.937 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.547 0.052 -14.439 14.868 hybrid contribution 0.047 -0.417 1.099 1.176 sum 3.594 -0.365 -13.340 13.820 Atomic orbital electron populations 1.22233 1.00240 0.99180 0.99799 1.18916 0.89815 0.92603 0.87641 0.98265 1.21431 1.30534 1.12395 0.91062 0.92705 1.25749 0.95485 0.95854 1.01969 1.70021 1.38093 1.24260 1.24027 0.85553 0.78599 0.78678 0.78392 1.19948 1.20996 1.19548 1.60614 1.57858 1.09465 1.03505 1.21396 0.95758 0.93860 0.90813 0.96259 1.21730 1.02117 0.98037 0.93470 1.21602 0.97252 0.97683 0.97774 1.21604 0.96910 0.94937 0.89647 0.94531 1.21769 1.02237 0.98977 0.96542 1.60253 1.46516 1.24161 1.01612 1.21616 0.96589 0.94020 0.92514 0.94776 0.92052 0.96102 0.93025 0.84901 0.91458 0.91551 0.92137 0.89101 0.92095 0.90442 0.92413 0.83295 0.93734 0.95301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.77 8.92 71.98 0.64 -7.13 16 2 C 0.22 11.46 2.38 44.17 0.11 11.57 16 3 H 0.00 -0.03 7.13 -2.39 -0.02 -0.05 16 4 C -0.52 -29.30 8.84 25.60 0.23 -29.08 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.42 5.31 84.66 0.45 0.87 16 7 N -0.92 -54.53 11.33 21.45 0.24 -54.29 16 8 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.68 -29.78 6.04 -473.05 -2.86 -32.64 16 13 C 0.09 3.45 2.46 44.96 0.11 3.56 16 14 H 0.02 0.82 7.12 -2.38 -0.02 0.80 16 15 C -0.12 -3.31 5.27 30.67 0.16 -3.15 16 16 C -0.10 -2.47 5.37 30.65 0.16 -2.31 16 17 C 0.08 1.82 3.04 44.94 0.14 1.96 16 18 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 19 C -0.14 -2.41 9.43 71.98 0.68 -1.74 16 20 N -0.69 -19.91 6.50 -491.67 -3.20 -23.10 16 21 C 0.08 2.98 6.04 86.32 0.52 3.51 16 22 H 0.03 1.60 8.13 -2.39 -0.02 1.59 16 23 H 0.06 3.42 6.08 -2.39 -0.01 3.40 16 24 H 0.02 0.93 7.43 -2.39 -0.02 0.91 16 25 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 26 H 0.33 13.59 8.10 -89.70 -0.73 12.86 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.35 8.71 8.79 -89.70 -0.79 7.92 16 35 H 0.04 1.87 7.44 -2.39 -0.02 1.85 16 36 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -61.62 281.42 -1.05 -62.68 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.47 Total: 22.58 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 3.20 Total: -21.93 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -5.81 Total: -110.03 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -61.62 -1.05 -62.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246347515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.462 kcal (2) G-P(sol) polarization free energy of solvation -61.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds