Wall clock time and date at job start Thu Apr 9 2020 11:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47106 * 2 1 4 4 C 1.50694 * 109.47355 * 120.00049 * 2 1 3 5 5 H 1.08000 * 120.00563 * 120.00152 * 4 2 1 6 6 C 1.37885 * 119.99902 * 299.99988 * 4 2 1 7 7 N 1.31518 * 119.99792 * 179.72330 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 N 1.46903 * 109.47096 * 240.00107 * 2 1 3 13 13 C 1.46900 * 111.00000 * 84.99749 * 12 2 1 14 14 H 1.08998 * 109.52170 * 325.12886 * 13 12 2 15 15 C 1.53123 * 109.52225 * 85.31913 * 13 12 2 16 16 C 1.53035 * 109.27830 * 177.56166 * 15 13 12 17 17 N 1.46852 * 109.52348 * 300.81851 * 16 15 13 18 18 C 1.46849 * 111.19677 * 61.73866 * 17 16 15 19 19 H 1.09005 * 109.45405 * 178.25140 * 18 17 16 20 20 C 1.53001 * 109.46177 * 58.27788 * 18 17 16 21 21 C 1.53037 * 109.52533 * 298.26234 * 18 17 16 22 22 H 1.08998 * 109.47544 * 60.00332 * 1 2 3 23 23 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47131 * 299.99885 * 1 2 3 25 25 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 26 26 H 1.00902 * 110.99678 * 321.04393 * 12 2 1 27 27 H 1.09008 * 109.50014 * 297.49775 * 15 13 12 28 28 H 1.08991 * 109.50523 * 57.61598 * 15 13 12 29 29 H 1.08992 * 109.46287 * 180.80244 * 16 15 13 30 30 H 1.09007 * 109.45519 * 60.82410 * 16 15 13 31 31 H 1.00898 * 110.99623 * 297.64710 * 17 16 15 32 32 H 1.09001 * 109.47126 * 299.94705 * 20 18 17 33 33 H 1.09010 * 109.47026 * 59.94670 * 20 18 17 34 34 H 1.08995 * 109.47410 * 179.97438 * 20 18 17 35 35 H 1.09000 * 109.50585 * 299.23402 * 21 18 17 36 36 H 1.09007 * 109.53420 * 179.14218 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1332 -0.8625 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8725 2.6998 10 1 0.9759 1.9951 3.9067 11 1 0.8470 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 1 1.2592 0.9348 -2.2903 15 6 3.4151 0.9764 -2.3280 16 6 3.5004 1.8828 -3.5581 17 7 3.3954 1.0686 -4.7758 18 6 2.1041 0.3722 -4.8391 19 1 2.0439 -0.1974 -5.7665 20 6 0.9693 1.3976 -4.7961 21 6 1.9770 -0.5791 -3.6471 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8992 -0.5308 4.4375 26 1 1.4495 -1.4979 -1.4100 27 1 3.4774 1.5828 -1.4242 28 1 4.2377 0.2617 -2.3448 29 1 4.4542 2.4102 -3.5551 30 1 2.6853 2.6061 -3.5335 31 1 4.1618 0.4158 -4.8414 32 1 1.0291 1.9671 -3.8686 33 1 1.0596 2.0753 -5.6451 34 1 0.0107 0.8810 -4.8436 35 1 2.7771 -1.3185 -3.6847 36 1 1.0121 -1.0849 -3.6857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246353483.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:01 Heat of formation + Delta-G solvation = -2.256807 kcal Electronic energy + Delta-G solvation = -15002.099481 eV Core-core repulsion = 12713.688693 eV Total energy + Delta-G solvation = -2288.410788 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36491 -35.89206 -32.62710 -31.66806 -30.75074 -27.89780 -26.97232 -25.07453 -22.74946 -21.83864 -19.95810 -19.03179 -16.88156 -15.97613 -15.30777 -14.79486 -14.62418 -13.98500 -13.90998 -13.25115 -12.83550 -12.69232 -12.38232 -12.05883 -11.90329 -11.82716 -11.57755 -11.35717 -11.07296 -10.92386 -10.56135 -10.28698 -10.10712 -9.86011 -9.51731 -9.12519 -8.57132 -8.29436 -7.42006 -6.04744 -4.01770 3.24407 3.34297 3.37230 4.30818 4.39861 4.77340 4.93567 5.11188 5.19792 5.25733 5.44759 5.50366 5.58803 5.61269 5.71713 5.91107 5.96776 6.04109 6.17337 6.19783 6.21078 6.24595 6.32912 6.42205 6.54653 6.63414 6.80068 7.10351 7.12697 7.43963 7.72900 7.94320 8.34723 8.70550 9.06656 9.58215 11.08940 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047043 B = 0.008109 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.063219 B = 3452.009720 C = 3512.305762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.184 3.816 3 H 0.033 0.967 4 C -0.497 4.497 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.902 5.902 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.669 5.669 13 C 0.086 3.914 14 H 0.038 0.962 15 C -0.143 4.143 16 C 0.052 3.948 17 N -0.683 5.683 18 C 0.086 3.914 19 H 0.078 0.922 20 C -0.149 4.149 21 C -0.153 4.153 22 H 0.025 0.975 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.263 0.737 26 H 0.330 0.670 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.340 0.660 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 4.140 -15.237 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.075 3.925 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.540 5.540 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.299 5.299 13 C -0.024 4.024 14 H 0.055 0.945 15 C -0.183 4.183 16 C -0.078 4.078 17 N -0.312 5.312 18 C -0.025 4.025 19 H 0.096 0.904 20 C -0.206 4.206 21 C -0.192 4.192 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.796 4.752 -15.268 16.010 hybrid contribution -1.553 0.152 0.899 1.801 sum -2.348 4.904 -14.369 15.364 Atomic orbital electron populations 1.22860 1.01675 1.00801 0.98747 1.19651 0.88364 0.95056 0.89473 0.94958 1.20996 1.31109 1.13684 0.87789 0.90126 1.24950 0.96003 0.96612 0.95903 1.69889 1.46128 1.40210 0.97820 0.86892 0.80593 0.83984 0.76846 1.20829 1.22397 1.19557 1.60650 1.57870 1.08650 1.02740 1.21486 0.96320 0.94434 0.90154 0.94463 1.22257 0.98221 0.99056 0.98745 1.22097 1.01982 0.96081 0.87631 1.60746 1.04009 1.27909 1.38493 1.21504 0.90056 0.93861 0.97085 0.90353 1.21926 0.97158 0.99195 1.02358 1.22470 1.02284 0.98805 0.95691 0.95637 0.92785 0.93708 0.92717 0.85239 0.91354 0.91459 0.90992 0.91001 0.84290 0.92076 0.92277 0.92568 0.91297 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 8.62 37.16 0.32 -3.65 16 2 C 0.18 4.35 1.98 -68.87 -0.14 4.21 16 3 H 0.03 0.81 6.22 -51.93 -0.32 0.48 16 4 C -0.50 -14.17 9.42 -34.44 -0.32 -14.49 16 5 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 8 Si 0.89 22.19 24.37 -169.99 -4.14 18.05 16 9 H -0.28 -6.87 6.87 56.52 0.39 -6.48 16 10 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 11 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 12 N -0.67 -13.57 6.04 -100.82 -0.61 -14.18 16 13 C 0.09 1.43 2.06 -67.59 -0.14 1.29 16 14 H 0.04 0.65 5.53 -51.93 -0.29 0.36 16 15 C -0.14 -2.27 5.56 -26.65 -0.15 -2.42 16 16 C 0.05 0.67 6.26 -3.83 -0.02 0.65 16 17 N -0.68 -8.13 6.67 -106.76 -0.71 -8.84 16 18 C 0.09 1.00 3.69 -67.72 -0.25 0.75 16 19 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 20 C -0.15 -1.71 8.59 37.16 0.32 -1.40 16 21 C -0.15 -2.05 4.86 -26.65 -0.13 -2.18 16 22 H 0.02 0.48 7.43 -51.93 -0.39 0.09 16 23 H 0.05 1.14 8.13 -51.92 -0.42 0.72 16 24 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.33 6.37 8.10 -39.29 -0.32 6.05 16 27 H 0.07 1.22 7.49 -51.92 -0.39 0.83 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.94 6.19 -51.93 -0.32 0.62 16 31 H 0.34 3.74 8.86 -39.29 -0.35 3.40 16 32 H 0.06 0.78 4.80 -51.93 -0.25 0.53 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 LS Contribution 267.42 15.07 4.03 4.03 Total: -1.00 -29.90 267.42 -7.05 -36.95 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.78 Total: 6.50 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.61 Total: -15.39 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.55 Total: -50.14 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.90 -7.05 -36.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246353483.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.692 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds