Wall clock time and date at job start Thu Apr 9 2020 11:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46687 * 2 1 4 4 H 1.08994 * 109.46971 * 304.06354 * 3 2 1 5 5 C 1.50699 * 109.46853 * 184.06275 * 3 2 1 6 6 H 1.07998 * 120.00033 * 239.99844 * 5 3 2 7 7 C 1.37880 * 120.00031 * 60.00504 * 5 3 2 8 8 N 1.31517 * 119.99686 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00151 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47198 * 59.99756 * 9 7 5 11 11 H 1.48501 * 109.47375 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46993 * 299.99802 * 9 7 5 13 13 N 1.46903 * 109.46972 * 64.06736 * 3 2 1 14 14 C 1.46902 * 110.99882 * 205.34810 * 13 3 2 15 15 H 1.08998 * 110.61533 * 323.01689 * 14 13 3 16 16 C 1.54270 * 110.68856 * 86.07659 * 14 13 3 17 17 O 1.45586 * 106.36703 * 117.33043 * 16 14 13 18 18 C 1.34523 * 109.64305 * 21.26436 * 17 16 14 19 19 O 1.20822 * 126.43338 * 147.14753 * 18 17 16 20 20 C 1.51791 * 107.13777 * 327.17878 * 18 17 16 21 21 H 1.09006 * 109.46766 * 174.81480 * 1 2 3 22 22 H 1.09006 * 109.47428 * 294.80804 * 1 2 3 23 23 H 1.08994 * 109.47648 * 54.81329 * 1 2 3 24 24 H 1.08993 * 109.47134 * 240.00355 * 2 1 3 25 25 H 1.09001 * 109.47442 * 119.99799 * 2 1 3 26 26 H 0.96997 * 119.99630 * 180.02562 * 8 7 5 27 27 H 1.00897 * 111.00324 * 81.39292 * 13 3 2 28 28 H 1.09003 * 110.07275 * 236.55687 * 16 14 13 29 29 H 1.08992 * 110.07534 * 358.04376 * 16 14 13 30 30 H 1.09005 * 110.60637 * 272.11201 * 20 18 17 31 31 H 1.08998 * 110.61361 * 149.13726 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6183 1.9770 -0.8513 5 6 3.5435 1.4439 -0.1007 6 1 4.1368 1.8927 0.6822 7 6 4.1618 0.8721 -1.1924 8 7 3.4394 0.3251 -2.1456 9 14 6.0256 0.8742 -1.3175 10 1 6.6005 0.1465 -0.1576 11 1 6.4380 0.2028 -2.5763 12 1 6.5201 2.2745 -1.3178 13 7 1.6320 2.1061 1.2456 14 6 1.5477 3.5614 1.0636 15 1 2.3391 3.9118 0.4010 16 6 0.1620 3.9631 0.5175 17 8 -0.4507 4.8066 1.5337 18 6 0.5037 5.3207 2.3302 19 8 0.4838 6.4027 2.8675 20 6 1.6107 4.2866 2.4267 21 1 -0.3633 -1.0235 -0.0929 22 1 -0.3634 0.4312 0.9329 23 1 -0.3634 0.5921 -0.8398 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8744 -0.0774 -2.9134 27 1 2.2576 1.8719 2.0017 28 1 0.2736 4.5194 -0.4132 29 1 -0.4465 3.0743 0.3510 30 1 1.4146 3.5897 3.2416 31 1 2.5780 4.7712 2.5592 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155411.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:17 Heat of formation + Delta-G solvation = -106.112175 kcal Electronic energy + Delta-G solvation = -14571.658087 eV Core-core repulsion = 12045.192035 eV Total energy + Delta-G solvation = -2526.466051 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.87492 -38.83263 -37.71484 -34.83626 -33.32275 -30.87737 -28.90224 -27.73798 -24.67568 -22.53480 -22.10359 -21.12810 -18.69587 -18.11180 -17.85826 -17.31772 -16.79353 -15.91207 -15.45231 -15.12226 -14.62000 -14.47336 -14.07820 -13.36221 -13.32837 -13.09358 -12.99416 -12.64352 -12.57735 -12.43140 -12.06239 -11.57549 -11.45870 -11.43351 -11.16734 -10.98972 -10.42757 -9.16540 -8.04756 -6.25239 0.83320 1.41534 1.44164 1.49419 2.37009 2.42016 2.99405 3.18157 3.40376 3.50356 3.99492 4.35810 4.44164 4.65981 4.67349 4.79864 4.81577 4.90975 4.99607 5.22579 5.48801 5.55915 5.66193 5.70255 5.80187 6.11876 6.18922 6.32044 6.37233 6.76975 7.00601 7.46584 8.92185 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033654 B = 0.008871 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.801865 B = 3155.664701 C = 3723.123073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C 0.221 3.779 4 H 0.012 0.988 5 C -0.560 4.560 6 H 0.056 0.944 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.060 3.940 15 H 0.064 0.936 16 C 0.068 3.932 17 O -0.367 6.367 18 C 0.495 3.505 19 O -0.492 6.492 20 C -0.172 4.172 21 H 0.039 0.961 22 H 0.060 0.940 23 H 0.035 0.965 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.261 0.739 27 H 0.342 0.658 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 3.002 4.957 6.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.030 0.970 5 C -0.599 4.599 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.297 5.297 14 C -0.051 4.051 15 H 0.082 0.918 16 C -0.007 4.007 17 O -0.284 6.284 18 C 0.337 3.663 19 O -0.378 6.378 20 C -0.210 4.210 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.160 0.840 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.155 0.845 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.917 3.340 4.918 7.120 hybrid contribution 2.128 -0.030 -0.521 2.191 sum -1.789 3.310 4.397 5.788 Atomic orbital electron populations 1.21595 0.96335 0.99617 1.00917 1.21374 0.94395 0.98402 1.00149 1.19004 0.91461 0.91558 0.86733 0.96998 1.22169 0.94055 1.37857 1.05833 0.92628 1.25591 1.01582 0.94924 0.95652 1.69981 1.36376 1.38411 1.09961 0.85832 0.81730 0.78140 0.77197 1.19923 1.21463 1.20034 1.60950 1.55666 1.04375 1.08715 1.22505 0.96298 0.90884 0.95406 0.91773 1.24201 0.94394 0.94109 0.87969 1.87024 1.36291 1.61318 1.43790 1.23592 0.82495 0.85009 0.75155 1.90656 1.77856 1.21472 1.47771 1.23141 0.99718 0.97927 1.00202 0.94168 0.92081 0.94584 0.92214 0.95251 0.92961 0.83978 0.88881 0.86695 0.84487 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.73 71.98 0.70 -3.83 16 2 C -0.10 -4.50 5.45 30.60 0.17 -4.33 16 3 C 0.22 9.53 1.85 44.17 0.08 9.61 16 4 H 0.01 0.58 7.73 -2.39 -0.02 0.56 16 5 C -0.56 -27.15 8.31 25.60 0.21 -26.93 16 6 H 0.06 2.62 7.74 -2.91 -0.02 2.60 16 7 C 0.02 1.17 5.30 84.65 0.45 1.62 16 8 N -0.91 -48.59 11.30 21.45 0.24 -48.35 16 9 Si 0.94 40.70 29.54 68.60 2.03 42.72 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 N -0.67 -22.58 5.44 -468.44 -2.55 -25.12 16 14 C 0.06 1.80 3.22 45.86 0.15 1.95 16 15 H 0.06 2.14 7.76 -2.39 -0.02 2.12 16 16 C 0.07 1.91 7.52 72.41 0.54 2.45 16 17 O -0.37 -11.20 11.07 -54.72 -0.61 -11.80 16 18 C 0.50 14.95 8.57 71.58 0.61 15.56 16 19 O -0.49 -17.54 18.00 21.53 0.39 -17.15 16 20 C -0.17 -4.27 6.53 30.72 0.20 -4.07 16 21 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 22 H 0.06 2.00 7.87 -2.38 -0.02 1.98 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 24 H 0.06 2.98 5.97 -2.39 -0.01 2.97 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 27 H 0.34 11.19 8.09 -89.70 -0.73 10.46 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.12 3.29 7.95 -2.39 -0.02 3.27 16 30 H 0.14 3.00 7.92 -2.38 -0.02 2.98 16 31 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -55.78 263.18 3.02 -52.77 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.40 Total: 14.92 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 3.12 Total: -7.98 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -2.30 Total: -73.48 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.22 Total: -28.96 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -55.78 3.02 -52.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155411.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.346 kcal (2) G-P(sol) polarization free energy of solvation -55.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds