Wall clock time and date at job start Thu Apr 9 2020 11:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47018 * 2 1 4 4 H 1.09001 * 109.47026 * 179.65565 * 3 2 1 5 5 C 1.50697 * 109.47053 * 59.65814 * 3 2 1 6 6 H 1.07999 * 119.99978 * 239.99776 * 5 3 2 7 7 C 1.37878 * 120.00357 * 59.99664 * 5 3 2 8 8 N 1.31517 * 119.99524 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00338 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46950 * 60.00017 * 9 7 5 11 11 H 1.48498 * 109.47197 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46829 * 300.00097 * 9 7 5 13 13 N 1.46898 * 109.47656 * 299.65532 * 3 2 1 14 14 C 1.46899 * 110.99962 * 273.52293 * 13 3 2 15 15 H 1.08999 * 110.62601 * 30.61228 * 14 13 3 16 16 C 1.54369 * 110.70261 * 267.51649 * 14 13 3 17 17 O 1.46263 * 104.91396 * 223.90113 * 16 14 13 18 18 C 1.34567 * 108.50336 * 32.24030 * 17 16 14 19 19 O 1.20830 * 125.94528 * 146.78954 * 18 17 16 20 20 C 1.51504 * 108.10974 * 326.76450 * 18 17 16 21 21 H 1.09008 * 109.47278 * 175.10520 * 1 2 3 22 22 H 1.08999 * 109.47583 * 295.10700 * 1 2 3 23 23 H 1.09000 * 109.47124 * 55.11179 * 1 2 3 24 24 H 1.09004 * 109.46716 * 239.99947 * 2 1 3 25 25 H 1.09000 * 109.47137 * 120.00212 * 2 1 3 26 26 H 0.97006 * 119.99632 * 180.02562 * 8 7 5 27 27 H 1.00892 * 111.00478 * 149.56370 * 13 3 2 28 28 H 1.09001 * 110.31746 * 342.69312 * 16 14 13 29 29 H 1.08995 * 110.32368 * 104.88905 * 16 14 13 30 30 H 1.09002 * 110.40295 * 261.59735 * 20 18 17 31 31 H 1.08994 * 110.50459 * 139.22146 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1299 1.4424 0.0062 5 6 1.5307 2.1552 1.2262 6 1 0.9104 3.0331 1.1219 7 6 1.8566 1.6867 2.4813 8 7 2.6124 0.6179 2.6083 9 14 1.2259 2.5707 4.0012 10 1 -0.2590 2.5713 3.9930 11 1 1.7134 1.8726 5.2179 12 1 1.7216 3.9706 4.0010 13 7 1.5571 2.1326 -1.2035 14 6 2.4661 1.9132 -2.3365 15 1 2.9515 0.9405 -2.2565 16 6 3.5159 3.0418 -2.4204 17 8 3.5845 3.3873 -3.8400 18 6 2.3675 3.2027 -4.3838 19 8 1.8850 3.8535 -5.2803 20 6 1.7077 2.0365 -3.6767 21 1 -0.3634 -1.0240 -0.0877 22 1 -0.3634 0.4360 0.9305 23 1 -0.3633 0.5878 -0.8430 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.8414 0.2880 3.4913 27 1 1.4289 3.1179 -1.0284 28 1 3.1927 3.9036 -1.8365 29 1 4.4836 2.6857 -2.0672 30 1 1.8203 1.1240 -4.2623 31 1 0.6529 2.2451 -3.4986 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155417.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:20 Heat of formation + Delta-G solvation = -102.786483 kcal Electronic energy + Delta-G solvation = -14578.987311 eV Core-core repulsion = 12052.665472 eV Total energy + Delta-G solvation = -2526.321839 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.90506 -38.86239 -37.76005 -34.92476 -33.02386 -30.90209 -28.72194 -27.54391 -25.08268 -22.85377 -22.21410 -20.88418 -18.65797 -17.83060 -17.73621 -17.35510 -16.81430 -15.77419 -15.52046 -15.01859 -14.65110 -14.30471 -14.23868 -13.83464 -13.41344 -12.97194 -12.78243 -12.58199 -12.52464 -12.31666 -11.95294 -11.70029 -11.62289 -11.30358 -11.21665 -10.76802 -10.49973 -9.06952 -8.07708 -6.18463 0.84564 1.44646 1.47110 1.52424 2.35538 2.44331 3.01038 3.22465 3.42096 3.59555 3.94362 4.08258 4.46606 4.58110 4.70467 4.83978 4.87278 4.91015 5.02914 5.37078 5.42887 5.60700 5.63633 5.75103 5.85329 5.95025 6.32729 6.34030 6.45302 6.75657 7.02314 7.50375 8.96555 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043722 B = 0.007881 C = 0.007405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.260660 B = 3551.841866 C = 3780.222893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C 0.222 3.778 4 H -0.016 1.016 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.061 3.939 15 H 0.105 0.895 16 C 0.032 3.968 17 O -0.370 6.370 18 C 0.489 3.511 19 O -0.496 6.496 20 C -0.164 4.164 21 H 0.031 0.969 22 H 0.027 0.973 23 H 0.058 0.942 24 H 0.029 0.971 25 H 0.056 0.944 26 H 0.260 0.740 27 H 0.338 0.662 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 0.572 -6.788 6.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.001 0.999 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.772 3.228 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.298 5.298 14 C -0.051 4.051 15 H 0.123 0.877 16 C -0.043 4.043 17 O -0.288 6.288 18 C 0.332 3.668 19 O -0.381 6.381 20 C -0.202 4.202 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.077 0.923 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.157 0.843 28 H 0.105 0.895 29 H 0.140 0.860 30 H 0.155 0.845 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.399 0.335 -7.327 7.345 hybrid contribution 0.578 0.855 1.411 1.748 sum 0.178 1.189 -5.916 6.037 Atomic orbital electron populations 1.21333 0.96351 0.98430 1.00689 1.21363 0.96038 0.97769 0.98917 1.18964 0.91805 0.91921 0.85913 0.99865 1.21439 1.31495 1.12063 0.91364 0.92413 1.25498 0.95312 0.95578 1.01360 1.69982 1.37677 1.23807 1.23744 0.85806 0.78707 0.78825 0.79430 1.20103 1.21531 1.19847 1.60673 1.46799 1.16595 1.05770 1.22778 0.91396 0.99240 0.91687 0.87709 1.25177 1.04035 0.99029 0.76064 1.87252 1.32048 1.83261 1.26191 1.23809 0.79561 0.83121 0.80352 1.90653 1.64883 1.51715 1.30875 1.22930 1.03055 0.98164 0.96063 0.94979 0.95387 0.92305 0.95241 0.92521 0.93078 0.84270 0.89491 0.85956 0.84487 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 9.48 71.98 0.68 -3.73 16 2 C -0.10 -4.38 5.58 30.59 0.17 -4.21 16 3 C 0.22 9.53 2.15 44.17 0.10 9.63 16 4 H -0.02 -0.76 7.83 -2.39 -0.02 -0.78 16 5 C -0.53 -25.51 7.40 25.60 0.19 -25.32 16 6 H 0.06 2.77 7.60 -2.91 -0.02 2.75 16 7 C 0.02 1.13 5.30 84.65 0.45 1.58 16 8 N -0.91 -48.73 11.32 21.45 0.24 -48.49 16 9 Si 0.95 40.98 29.54 68.60 2.03 43.00 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 N -0.67 -22.59 5.25 -468.40 -2.46 -25.05 16 14 C 0.06 1.66 3.27 45.88 0.15 1.81 16 15 H 0.10 2.86 7.34 -2.39 -0.02 2.85 16 16 C 0.03 0.84 7.58 72.45 0.55 1.39 16 17 O -0.37 -10.76 11.17 -55.13 -0.62 -11.38 16 18 C 0.49 14.38 8.51 71.49 0.61 14.99 16 19 O -0.50 -17.65 18.00 21.54 0.39 -17.26 16 20 C -0.16 -3.92 6.75 30.61 0.21 -3.72 16 21 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 22 H 0.03 1.22 7.39 -2.39 -0.02 1.20 16 23 H 0.06 2.18 7.47 -2.39 -0.02 2.17 16 24 H 0.03 1.13 7.65 -2.38 -0.02 1.11 16 25 H 0.06 2.82 6.08 -2.39 -0.01 2.80 16 26 H 0.26 13.47 8.31 -92.70 -0.77 12.70 16 27 H 0.34 11.34 7.48 -89.70 -0.67 10.67 16 28 H 0.09 2.25 7.49 -2.39 -0.02 2.23 16 29 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.14 2.63 8.14 -2.39 -0.02 2.62 16 31 H 0.12 2.95 7.97 -2.39 -0.02 2.93 16 Total: -1.00 -56.52 259.64 3.14 -53.38 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.46 Total: 13.37 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 3.10 Total: -7.58 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -2.22 Total: -73.53 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.23 Total: -28.64 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Total: -56.52 3.14 -53.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155417.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.404 kcal (2) G-P(sol) polarization free energy of solvation -56.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds