Wall clock time and date at job start Thu Apr 9 2020 11:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47283 * 2 1 4 4 H 1.08998 * 109.46874 * 54.58261 * 3 2 1 5 5 C 1.50704 * 109.47187 * 174.58077 * 3 2 1 6 6 H 1.07998 * 119.99568 * 120.00110 * 5 3 2 7 7 C 1.37879 * 120.00124 * 300.00563 * 5 3 2 8 8 N 1.31517 * 119.99817 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00011 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47254 * 89.99437 * 9 7 5 11 11 H 1.48502 * 109.47235 * 209.99669 * 9 7 5 12 12 H 1.48500 * 109.47114 * 329.99342 * 9 7 5 13 13 N 1.46894 * 109.47030 * 294.58300 * 3 2 1 14 14 C 1.46902 * 110.99969 * 154.52696 * 13 3 2 15 15 H 1.09011 * 110.75077 * 35.70101 * 14 13 3 16 16 C 1.54265 * 110.84736 * 272.23237 * 14 13 3 17 17 O 1.45373 * 106.63114 * 226.61479 * 16 14 13 18 18 C 1.34010 * 111.49281 * 357.72783 * 17 16 14 19 19 O 1.20817 * 125.69583 * 199.68830 * 18 17 16 20 20 C 1.51992 * 108.71026 * 19.51113 * 18 17 16 21 21 H 1.09003 * 109.47165 * 302.29006 * 1 2 3 22 22 H 1.09002 * 109.46912 * 62.28551 * 1 2 3 23 23 H 1.08997 * 109.47279 * 182.28572 * 1 2 3 24 24 H 1.09002 * 109.47315 * 240.00401 * 2 1 3 25 25 H 1.08997 * 109.47178 * 120.00397 * 2 1 3 26 26 H 0.96998 * 119.99733 * 179.97438 * 8 7 5 27 27 H 1.00896 * 111.00595 * 30.57457 * 13 3 2 28 28 H 1.08996 * 110.02333 * 345.90817 * 16 14 13 29 29 H 1.09008 * 110.02147 * 107.32371 * 16 14 13 30 30 H 1.08998 * 110.89732 * 213.34504 * 20 18 17 31 31 H 1.08996 * 110.66617 * 89.99891 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9835 0.8375 5 6 3.5411 1.4446 0.1342 6 1 4.1516 1.8873 -0.6389 7 6 4.1348 0.8813 1.2438 8 7 3.3912 0.3426 2.1853 9 14 5.9954 0.8845 1.4104 10 1 6.4272 2.1192 2.1135 11 1 6.4247 -0.3047 2.1894 12 1 6.6133 0.8416 0.0608 13 7 1.6601 2.0962 -1.2594 14 6 1.5692 3.5526 -1.0901 15 1 2.3293 3.9087 -0.3946 16 6 0.1587 3.9636 -0.6195 17 8 -0.2462 5.0861 -1.4498 18 6 0.7223 5.4375 -2.3068 19 8 0.8145 6.5035 -2.8678 20 6 1.6892 4.2740 -2.4535 21 1 -0.3634 0.5490 0.8688 22 1 -0.3633 0.4779 -0.9098 23 1 -0.3634 -1.0268 0.0410 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8090 -0.0541 2.9657 27 1 0.7948 1.7190 -1.6160 28 1 -0.5351 3.1332 -0.7503 29 1 0.1878 4.2652 0.4276 30 1 2.7066 4.6316 -2.6121 31 1 1.3795 3.6166 -3.2659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155420.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:22 Heat of formation + Delta-G solvation = -88.119283 kcal Electronic energy + Delta-G solvation = -14561.254691 eV Core-core repulsion = 12035.568870 eV Total energy + Delta-G solvation = -2525.685821 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67982 -37.51745 -36.30464 -33.26408 -31.70592 -29.39622 -27.56607 -26.18442 -23.03542 -21.29731 -20.89192 -19.79057 -17.01026 -16.66404 -16.34197 -15.90334 -15.02303 -14.30926 -14.14823 -13.67484 -13.47912 -12.89868 -12.79799 -12.17796 -12.08530 -11.64477 -11.29002 -11.09875 -10.91685 -10.74328 -10.39144 -10.20518 -10.08557 -9.81411 -9.70408 -9.26038 -8.48151 -7.55559 -6.09701 -4.14839 2.22787 3.25343 3.32993 3.36978 3.41558 4.16955 4.35898 4.65461 4.80363 5.11072 5.20153 5.42521 5.54629 5.67161 6.00011 6.01965 6.02724 6.21005 6.27949 6.68280 6.88184 6.94486 6.97085 7.25868 7.61098 7.62476 7.76213 8.01176 8.20677 8.49604 8.92797 9.51223 10.95615 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032347 B = 0.008944 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.398673 B = 3129.910067 C = 3723.556467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.216 3.784 4 H 0.007 0.993 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.668 5.668 14 C 0.068 3.932 15 H 0.112 0.888 16 C 0.025 3.975 17 O -0.357 6.357 18 C 0.485 3.515 19 O -0.469 6.469 20 C -0.177 4.177 21 H 0.044 0.956 22 H 0.034 0.966 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.102 0.898 26 H 0.261 0.739 27 H 0.323 0.677 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.816 2.175 -3.986 6.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C 0.110 3.890 4 H 0.024 0.976 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.300 5.300 14 C -0.045 4.045 15 H 0.130 0.870 16 C -0.052 4.052 17 O -0.273 6.273 18 C 0.326 3.674 19 O -0.354 6.354 20 C -0.216 4.216 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.120 0.880 26 H 0.071 0.929 27 H 0.143 0.857 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.308 2.664 -4.271 6.625 hybrid contribution 0.196 -0.179 0.754 0.800 sum -4.112 2.485 -3.517 5.954 Atomic orbital electron populations 1.21916 0.99518 1.00031 0.99538 1.21793 0.91259 1.00115 1.03438 1.19258 0.95848 0.90192 0.83728 0.97552 1.21183 0.90978 1.37130 1.04581 0.91862 1.24958 0.98297 0.95385 0.95767 1.69857 1.34890 1.39045 1.09566 0.86528 0.85489 0.77449 0.78142 1.20808 1.21306 1.19839 1.60754 1.36185 0.99618 1.33414 1.22819 0.94597 0.92031 0.95026 0.87023 1.25043 0.98679 0.86852 0.94600 1.86697 1.41861 1.49935 1.48774 1.23494 0.80135 0.87644 0.76101 1.90673 1.72389 1.25178 1.47126 1.23148 1.01309 0.96187 1.00976 0.93734 0.94669 0.94130 0.93818 0.87988 0.92908 0.85720 0.89026 0.88794 0.87103 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.71 37.16 0.36 -2.24 16 2 C -0.13 -2.71 5.36 -26.73 -0.14 -2.85 16 3 C 0.22 4.76 1.90 -68.86 -0.13 4.62 16 4 H 0.01 0.16 7.79 -51.93 -0.40 -0.24 16 5 C -0.50 -12.66 8.56 -34.44 -0.29 -12.96 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.89 -23.89 11.29 55.43 0.63 -23.26 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.67 -12.03 6.13 -99.31 -0.61 -12.63 16 14 C 0.07 1.07 3.16 -66.15 -0.21 0.87 16 15 H 0.11 1.96 7.76 -51.92 -0.40 1.56 16 16 C 0.02 0.35 7.60 37.82 0.29 0.64 16 17 O -0.36 -5.60 10.95 -38.29 -0.42 -6.02 16 18 C 0.49 7.79 8.63 36.64 0.32 8.10 16 19 O -0.47 -8.79 18.00 -18.36 -0.33 -9.13 16 20 C -0.18 -2.51 6.72 -26.34 -0.18 -2.69 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.03 0.52 6.52 -51.93 -0.34 0.18 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.10 2.49 5.94 -51.93 -0.31 2.18 16 26 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.32 5.20 5.93 -39.29 -0.23 4.97 16 28 H 0.09 1.19 7.55 -51.93 -0.39 0.80 16 29 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 30 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.12 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 260.56 15.07 3.93 3.93 Total: -1.00 -27.61 260.56 -6.07 -33.68 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.16 Total: 3.14 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.08 Total: -5.12 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.02 Total: -35.90 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.75 Total: -15.15 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.61 -6.07 -33.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155420.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.439 kcal (2) G-P(sol) polarization free energy of solvation -27.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds