Wall clock time and date at job start Thu Apr 9 2020 11:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.99083 * 2 1 4 4 O 1.43742 * 109.88095 * 121.08454 * 2 1 3 5 5 C 1.44379 * 106.98098 * 145.94098 * 4 2 1 6 6 C 1.55354 * 103.49696 * 319.90780 * 5 4 2 7 7 C 1.54104 * 109.88216 * 238.91617 * 2 1 3 8 8 H 1.08998 * 110.48304 * 357.35300 * 7 2 1 9 9 C 1.50700 * 110.48829 * 119.86819 * 7 2 1 10 10 O 1.21290 * 119.99945 * 358.15460 * 9 7 2 11 11 N 1.34769 * 119.99953 * 178.15936 * 9 7 2 12 12 C 1.46505 * 120.00148 * 359.97438 * 11 9 7 13 13 C 1.37096 * 120.00013 * 180.02562 * 11 9 7 14 14 H 1.08001 * 120.00188 * 332.42220 * 13 11 9 15 15 C 1.38956 * 119.99908 * 152.42118 * 13 11 9 16 16 N 1.31406 * 120.00447 * 331.80072 * 15 13 11 17 17 Si 1.86806 * 119.99734 * 151.80036 * 15 13 11 18 18 H 1.48502 * 109.46945 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47020 * 299.99965 * 17 15 13 20 20 H 1.48495 * 109.47038 * 60.00050 * 17 15 13 21 21 H 1.09004 * 109.46781 * 181.08339 * 1 2 3 22 22 H 1.08992 * 109.46968 * 301.08183 * 1 2 3 23 23 H 1.09000 * 109.47274 * 61.08799 * 1 2 3 24 24 H 1.09004 * 110.61774 * 78.43481 * 5 4 2 25 25 H 1.08996 * 110.62244 * 201.28277 * 5 4 2 26 26 H 1.08996 * 110.95715 * 278.92226 * 6 5 4 27 27 H 1.09005 * 111.00257 * 155.20604 * 6 5 4 28 28 H 1.08999 * 109.46572 * 273.96660 * 12 11 9 29 29 H 1.09001 * 109.46859 * 33.96278 * 12 11 9 30 30 H 1.08998 * 109.47539 * 153.96850 * 12 11 9 31 31 H 0.97006 * 119.99918 * 353.91231 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2380 -1.3641 0.7648 6 6 2.9189 -1.8934 -0.6605 7 6 2.0541 -0.7482 -1.2411 8 1 1.2246 -1.1529 -1.8210 9 6 2.8946 0.1675 -2.0932 10 8 3.0428 1.3278 -1.7725 11 7 3.4814 -0.3028 -3.2115 12 6 3.3026 -1.7044 -3.5987 13 6 4.2464 0.5302 -3.9864 14 1 4.0474 1.5916 -3.9974 15 6 5.2780 0.0087 -4.7577 16 7 5.8905 -1.0906 -4.3791 17 14 5.7941 0.8704 -6.3327 18 1 6.9073 0.1188 -6.9662 19 1 4.6410 0.9268 -7.2668 20 1 6.2438 2.2500 -6.0176 21 1 -0.3633 -1.0275 0.0194 22 1 -0.3633 0.5305 0.8801 23 1 -0.3634 0.4968 -0.8996 24 1 4.0685 -0.6587 0.7356 25 1 3.4600 -2.1890 1.4418 26 1 2.3520 -2.8232 -0.6132 27 1 3.8315 -2.0248 -1.2419 28 1 4.0483 -2.3186 -3.0938 29 1 2.3045 -2.0359 -3.3123 30 1 3.4222 -1.8015 -4.6777 31 1 5.6842 -1.4892 -3.5192 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086757576.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:00 Heat of formation + Delta-G solvation = -102.704886 kcal Electronic energy + Delta-G solvation = -15029.637850 eV Core-core repulsion = 12503.319550 eV Total energy + Delta-G solvation = -2526.318300 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.51067 -39.39258 -37.00166 -34.11101 -33.05909 -32.28838 -28.40866 -27.63809 -25.90445 -23.33146 -22.81438 -20.75716 -19.43867 -18.06674 -17.18671 -17.01850 -16.37008 -16.22467 -15.82737 -15.53893 -14.70400 -14.27250 -13.91402 -13.72779 -13.42411 -13.25619 -13.16797 -12.68135 -12.57247 -12.20185 -12.06471 -11.98269 -11.93492 -11.82418 -10.97400 -10.76365 -10.31424 -9.90880 -8.81386 -6.10860 1.47908 1.53374 1.81371 1.90523 2.35851 2.76640 2.85960 2.98519 3.52258 3.73161 3.77497 4.01864 4.17801 4.27019 4.40395 4.42451 4.54888 4.63713 4.72399 4.74024 4.82128 4.92364 5.00872 5.10455 5.22420 5.72815 5.84661 5.87896 6.56546 6.84629 7.34216 7.84595 8.43769 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052326 B = 0.009006 C = 0.008483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.982966 B = 3108.374914 C = 3299.752472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.052 0.948 4 O -0.384 6.384 5 C 0.045 3.955 6 C -0.139 4.139 7 C -0.126 4.126 8 H 0.124 0.876 9 C 0.443 3.557 10 O -0.629 6.629 11 N -0.465 5.465 12 C 0.089 3.911 13 C -0.437 4.437 14 H 0.054 0.946 15 C -0.019 4.019 16 N -0.882 5.882 17 Si 1.119 2.881 18 H -0.272 1.272 19 H -0.266 1.266 20 H -0.280 1.280 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.128 0.872 26 H 0.121 0.879 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 -6.083 4.021 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 H 0.070 0.930 4 O -0.303 6.303 5 C -0.031 4.031 6 C -0.177 4.177 7 C -0.147 4.147 8 H 0.142 0.858 9 C 0.233 3.767 10 O -0.516 6.516 11 N -0.184 5.184 12 C -0.054 4.054 13 C -0.564 4.564 14 H 0.072 0.928 15 C -0.223 4.223 16 N -0.516 5.516 17 Si 0.939 3.061 18 H -0.197 1.197 19 H -0.191 1.191 20 H -0.206 1.206 21 H 0.100 0.900 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.146 0.854 26 H 0.139 0.861 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.633 -5.687 3.051 9.254 hybrid contribution -0.510 0.494 1.156 1.357 sum -7.143 -5.192 4.207 9.782 Atomic orbital electron populations 1.21848 0.90967 1.03799 1.02872 1.22722 0.96777 0.95457 0.83093 0.92979 1.88776 1.39962 1.67945 1.33659 1.23692 0.86805 0.96492 0.96099 1.23297 1.00291 0.98184 0.95904 1.22568 0.99166 0.96070 0.96915 0.85827 1.20894 0.85189 0.88937 0.81634 1.90461 1.67391 1.21139 1.72617 1.43812 1.43677 1.10605 1.20333 1.21837 1.01071 0.81784 1.00734 1.20293 1.16445 0.92781 1.26902 0.92756 1.27688 0.91353 0.97608 1.05658 1.70887 1.36460 1.21812 1.22459 0.82875 0.76947 0.74702 0.71555 1.19660 1.19141 1.20573 0.90006 0.91213 0.91078 0.94932 0.85421 0.86110 0.91011 0.93043 0.89467 0.92569 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.36 71.98 0.67 -2.98 16 2 C 0.08 2.74 3.67 30.97 0.11 2.85 16 3 H 0.05 2.28 6.44 -2.39 -0.02 2.27 16 4 O -0.38 -13.02 11.19 -148.98 -1.67 -14.69 16 5 C 0.05 1.39 7.73 72.79 0.56 1.96 16 6 C -0.14 -4.15 5.89 32.02 0.19 -3.96 16 7 C -0.13 -4.47 2.14 -10.55 -0.02 -4.49 16 8 H 0.12 3.66 6.96 -2.39 -0.02 3.65 16 9 C 0.44 21.87 6.96 87.66 0.61 22.48 16 10 O -0.63 -36.97 15.00 -3.06 -0.05 -37.01 16 11 N -0.47 -23.65 2.82 -658.89 -1.86 -25.51 16 12 C 0.09 3.59 7.36 127.77 0.94 4.53 16 13 C -0.44 -25.23 8.99 84.04 0.76 -24.47 16 14 H 0.05 3.44 7.62 -2.91 -0.02 3.42 16 15 C -0.02 -1.03 4.65 84.93 0.40 -0.63 16 16 N -0.88 -48.40 12.81 21.66 0.28 -48.12 16 17 Si 1.12 47.61 30.00 68.60 2.06 49.66 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.07 2.42 5.77 -2.38 -0.01 2.40 16 28 H 0.05 2.03 5.63 -2.39 -0.01 2.02 16 29 H 0.09 2.74 6.49 -2.39 -0.02 2.73 16 30 H 0.06 2.41 7.41 -2.39 -0.02 2.40 16 31 H 0.27 14.64 6.49 -92.70 -0.60 14.03 16 Total: -1.00 -71.06 251.57 4.27 -66.79 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.29 Total: 13.60 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 4.22 Total: -4.72 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.58 Total: -73.63 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -1.71 Total: -51.70 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.06 Total: 49.66 kcal Total: -71.06 4.27 -66.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757576.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.916 kcal (2) G-P(sol) polarization free energy of solvation -71.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds