Wall clock time and date at job start Thu Apr 9 2020 11:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.53578 * 2 1 4 4 C 1.53123 * 109.50366 * 239.90659 * 2 1 3 5 5 C 1.53114 * 109.16241 * 182.40607 * 4 2 1 6 6 C 1.53034 * 109.27871 * 57.65138 * 5 4 2 7 7 N 1.46849 * 109.52496 * 300.81919 * 6 5 4 8 8 C 1.46896 * 111.00014 * 185.84056 * 7 6 5 9 9 C 1.53002 * 109.47246 * 45.78982 * 8 7 6 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.46845 * 111.19510 * 61.74703 * 7 6 5 19 19 H 1.09002 * 109.47298 * 299.89761 * 1 2 3 20 20 H 1.08997 * 109.47202 * 59.89552 * 1 2 3 21 21 H 1.09005 * 109.47331 * 179.90116 * 1 2 3 22 22 H 0.96699 * 114.00144 * 300.09917 * 3 2 1 23 23 H 1.09001 * 109.51874 * 302.30844 * 4 2 1 24 24 H 1.08996 * 109.52255 * 62.49567 * 4 2 1 25 25 H 1.09004 * 109.50303 * 177.59232 * 5 4 2 26 26 H 1.08994 * 109.50190 * 297.67178 * 5 4 2 27 27 H 1.09004 * 109.46178 * 180.80599 * 6 5 4 28 28 H 1.08996 * 109.46518 * 60.84124 * 6 5 4 29 29 H 1.09004 * 109.47535 * 285.79129 * 8 7 6 30 30 H 1.09004 * 109.47041 * 165.79169 * 8 7 6 31 31 H 1.09000 * 109.46986 * 60.00111 * 9 8 7 32 32 H 1.08993 * 109.47662 * 299.99888 * 9 8 7 33 33 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.46391 * 58.27199 * 18 7 6 35 35 H 1.08998 * 109.46520 * 178.24462 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0078 1.3467 0.0000 4 6 2.0412 -0.7237 -1.2488 5 6 3.5711 -0.7719 -1.2108 6 6 4.0229 -1.4730 0.0722 7 7 3.5093 -0.7421 1.2378 8 6 4.0373 -1.3060 2.4873 9 6 5.5425 -1.5407 2.3449 10 6 6.0842 -2.1185 3.6270 11 1 5.4212 -2.3006 4.4599 12 6 7.4263 -2.4148 3.7366 13 7 7.8990 -2.9195 4.8553 14 14 8.5732 -2.0993 2.2963 15 1 8.6310 -3.3079 1.4355 16 1 8.0671 -0.9504 1.5031 17 1 9.9332 -1.7886 2.8053 18 6 2.0410 -0.7235 1.2480 19 1 -0.3634 0.5122 0.8909 20 1 -0.3633 0.5154 -0.8890 21 1 -0.3634 -1.0277 -0.0018 22 1 1.7218 1.8656 -0.7643 23 1 1.6452 -1.7391 -1.2691 24 1 1.7156 -0.1869 -2.1398 25 1 3.9394 -1.3234 -2.0759 26 1 3.9677 0.2431 -1.2305 27 1 5.1120 -1.4962 0.1092 28 1 3.6375 -2.4925 0.0841 29 1 3.5402 -2.2530 2.6972 30 1 3.8539 -0.6100 3.3060 31 1 6.0396 -0.5936 2.1350 32 1 5.7259 -2.2365 1.5263 33 1 8.8432 -3.1283 4.9323 34 1 1.6648 -1.7465 1.2543 35 1 1.6905 -0.2024 2.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161005984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:43 Heat of formation + Delta-G solvation = -58.254718 kcal Electronic energy + Delta-G solvation = -14905.699487 eV Core-core repulsion = 12517.141785 eV Total energy + Delta-G solvation = -2388.557702 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.49664 -36.30207 -33.45961 -32.29576 -31.33940 -29.78331 -26.57718 -25.34956 -22.71290 -22.10955 -19.86965 -19.35514 -16.92018 -16.28336 -15.46372 -15.03348 -14.53119 -14.29551 -13.95381 -13.70179 -13.02879 -12.84300 -12.57669 -12.39794 -11.94381 -11.91488 -11.76564 -11.23769 -11.03671 -10.80829 -10.67483 -10.25401 -9.94514 -9.82108 -9.66829 -9.57770 -9.10998 -8.50228 -7.67331 -6.01907 -3.99676 3.33033 3.40819 3.46765 4.21697 4.41920 4.48372 4.73415 4.87497 5.00309 5.19882 5.32541 5.41656 5.50323 5.62494 5.72347 5.78237 5.85115 5.86302 5.95959 6.06310 6.13615 6.24911 6.35422 6.44804 6.53797 6.78742 7.20484 7.38423 7.64503 7.69233 7.85719 7.90186 8.56291 9.02459 9.60627 11.11571 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052185 B = 0.007290 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.420356 B = 3839.734762 C = 4127.768287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.133 3.867 3 O -0.538 6.538 4 C -0.144 4.144 5 C -0.114 4.114 6 C 0.049 3.951 7 N -0.531 5.531 8 C 0.071 3.929 9 C -0.014 4.014 10 C -0.520 4.520 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.879 3.121 15 H -0.278 1.278 16 H -0.263 1.263 17 H -0.287 1.287 18 C 0.071 3.929 19 H 0.064 0.936 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.363 0.637 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.039 0.961 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 4.896 -13.381 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.092 3.908 3 O -0.342 6.342 4 C -0.182 4.182 5 C -0.151 4.151 6 C -0.079 4.079 7 N -0.255 5.255 8 C -0.056 4.056 9 C -0.051 4.051 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.706 3.294 15 H -0.204 1.204 16 H -0.187 1.187 17 H -0.214 1.214 18 C -0.058 4.058 19 H 0.083 0.917 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.209 0.791 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.596 5.112 -12.747 18.636 hybrid contribution 0.080 -0.682 -1.102 1.298 sum -12.516 4.430 -13.849 19.185 Atomic orbital electron populations 1.22473 0.96139 1.02521 1.02402 1.21226 0.91301 0.83180 0.95117 1.86749 1.76746 1.22351 1.48319 1.22272 0.97475 1.00870 0.97610 1.21535 0.94501 1.02073 0.97035 1.22197 1.01503 0.94194 0.90025 1.61957 1.05801 1.54495 1.03244 1.22124 0.97486 0.96463 0.89522 1.19712 0.91174 0.96813 0.97413 1.21092 0.94232 1.41611 0.98906 0.91089 1.24996 0.98129 0.94540 0.95712 1.69918 1.14302 1.44260 1.25855 0.86785 0.80173 0.79279 0.83181 1.20393 1.18715 1.21351 1.21994 0.89512 0.97448 0.96836 0.91688 0.92394 0.91810 0.79131 0.91651 0.92047 0.92126 0.90641 0.89498 0.95627 0.95815 0.91290 0.95608 0.96849 0.92756 0.94253 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 8.82 37.16 0.33 -1.38 16 2 C 0.13 1.66 1.00 -90.54 -0.09 1.57 16 3 O -0.54 -7.25 12.31 -35.23 -0.43 -7.68 16 4 C -0.14 -1.66 4.99 -26.61 -0.13 -1.79 16 5 C -0.11 -1.56 5.94 -26.65 -0.16 -1.71 16 6 C 0.05 0.84 4.85 -3.83 -0.02 0.82 16 7 N -0.53 -9.90 4.69 -234.67 -1.10 -11.00 16 8 C 0.07 1.52 5.21 -3.83 -0.02 1.50 16 9 C -0.01 -0.34 3.29 -27.88 -0.09 -0.43 16 10 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 11 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 14 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 C 0.07 1.09 4.40 -3.83 -0.02 1.07 16 19 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.36 3.28 9.05 45.56 0.41 3.70 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.11 7.80 -51.93 -0.40 0.70 16 27 H 0.09 1.64 5.81 -51.93 -0.30 1.34 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 32 H 0.01 0.33 5.64 -51.93 -0.29 0.03 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 274.08 15.07 4.13 4.13 Total: -1.00 -32.29 274.08 -7.12 -39.41 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.19 Total: -0.78 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.63 Total: -14.00 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.33 Total: -38.60 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.43 Total: -7.68 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.29 -7.12 -39.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161005984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.843 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds