Wall clock time and date at job start Thu Apr 9 2020 11:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.53578 * 2 1 4 4 C 1.53123 * 109.50366 * 239.90659 * 2 1 3 5 5 C 1.53114 * 109.16241 * 182.40607 * 4 2 1 6 6 C 1.53034 * 109.27871 * 57.65138 * 5 4 2 7 7 N 1.46849 * 109.52496 * 300.81919 * 6 5 4 8 8 C 1.46896 * 111.00014 * 185.84056 * 7 6 5 9 9 C 1.53002 * 109.47246 * 45.78982 * 8 7 6 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.46845 * 111.19510 * 61.74703 * 7 6 5 19 19 H 1.09002 * 109.47298 * 299.89761 * 1 2 3 20 20 H 1.08997 * 109.47202 * 59.89552 * 1 2 3 21 21 H 1.09005 * 109.47331 * 179.90116 * 1 2 3 22 22 H 0.96699 * 114.00144 * 300.09917 * 3 2 1 23 23 H 1.09001 * 109.51874 * 302.30844 * 4 2 1 24 24 H 1.08996 * 109.52255 * 62.49567 * 4 2 1 25 25 H 1.09004 * 109.50303 * 177.59232 * 5 4 2 26 26 H 1.08994 * 109.50190 * 297.67178 * 5 4 2 27 27 H 1.09004 * 109.46178 * 180.80599 * 6 5 4 28 28 H 1.08996 * 109.46518 * 60.84124 * 6 5 4 29 29 H 1.09004 * 109.47535 * 285.79129 * 8 7 6 30 30 H 1.09004 * 109.47041 * 165.79169 * 8 7 6 31 31 H 1.09000 * 109.46986 * 60.00111 * 9 8 7 32 32 H 1.08993 * 109.47662 * 299.99888 * 9 8 7 33 33 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.46391 * 58.27199 * 18 7 6 35 35 H 1.08998 * 109.46520 * 178.24462 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0078 1.3467 0.0000 4 6 2.0412 -0.7237 -1.2488 5 6 3.5711 -0.7719 -1.2108 6 6 4.0229 -1.4730 0.0722 7 7 3.5093 -0.7421 1.2378 8 6 4.0373 -1.3060 2.4873 9 6 5.5425 -1.5407 2.3449 10 6 6.0842 -2.1185 3.6270 11 1 5.4212 -2.3006 4.4599 12 6 7.4263 -2.4148 3.7366 13 7 7.8990 -2.9195 4.8553 14 14 8.5732 -2.0993 2.2963 15 1 8.6310 -3.3079 1.4355 16 1 8.0671 -0.9504 1.5031 17 1 9.9332 -1.7886 2.8053 18 6 2.0410 -0.7235 1.2480 19 1 -0.3634 0.5122 0.8909 20 1 -0.3633 0.5154 -0.8890 21 1 -0.3634 -1.0277 -0.0018 22 1 1.7218 1.8656 -0.7643 23 1 1.6452 -1.7391 -1.2691 24 1 1.7156 -0.1869 -2.1398 25 1 3.9394 -1.3234 -2.0759 26 1 3.9677 0.2431 -1.2305 27 1 5.1120 -1.4962 0.1092 28 1 3.6375 -2.4925 0.0841 29 1 3.5402 -2.2530 2.6972 30 1 3.8539 -0.6100 3.3060 31 1 6.0396 -0.5936 2.1350 32 1 5.7259 -2.2365 1.5263 33 1 8.8432 -3.1283 4.9323 34 1 1.6648 -1.7465 1.2543 35 1 1.6905 -0.2024 2.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161005984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:42 Heat of formation + Delta-G solvation = -83.162038 kcal Electronic energy + Delta-G solvation = -14906.779549 eV Core-core repulsion = 12517.141785 eV Total energy + Delta-G solvation = -2389.637764 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63963 -37.61631 -35.25800 -33.91950 -32.37995 -31.57255 -27.63869 -27.04267 -24.27818 -23.40807 -21.29062 -20.69514 -19.09370 -17.27780 -16.79223 -16.48713 -16.01916 -15.81414 -15.39130 -14.94397 -14.61596 -14.49374 -13.98102 -13.50020 -13.43663 -12.91312 -12.88715 -12.79815 -12.62226 -12.13584 -11.92158 -11.80886 -11.77410 -11.67189 -11.31044 -11.01059 -10.77515 -10.58910 -9.14099 -8.32620 -6.37216 1.32849 1.36233 1.49166 2.34219 2.98314 3.02499 3.38270 3.82539 3.87206 4.01149 4.17605 4.34557 4.39878 4.44184 4.56720 4.64298 4.71371 4.78496 4.85647 4.90109 4.95164 5.02081 5.06150 5.22779 5.26208 5.34360 5.41805 5.46510 5.60246 6.13176 6.24754 6.33290 6.70029 7.09241 7.27407 8.84212 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052185 B = 0.007290 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.420356 B = 3839.734762 C = 4127.768287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.134 3.866 3 O -0.563 6.563 4 C -0.139 4.139 5 C -0.108 4.108 6 C 0.043 3.957 7 N -0.540 5.540 8 C 0.081 3.919 9 C -0.003 4.003 10 C -0.536 4.536 11 H 0.031 0.969 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.951 3.049 15 H -0.263 1.263 16 H -0.250 1.250 17 H -0.280 1.280 18 C 0.063 3.937 19 H 0.058 0.942 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.383 0.617 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.047 0.953 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.019 5.447 -16.424 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.093 3.907 3 O -0.370 6.370 4 C -0.177 4.177 5 C -0.146 4.146 6 C -0.084 4.084 7 N -0.265 5.265 8 C -0.046 4.046 9 C -0.040 4.040 10 C -0.574 4.574 11 H 0.050 0.950 12 C -0.189 4.189 13 N -0.590 5.590 14 Si 0.773 3.227 15 H -0.187 1.187 16 H -0.174 1.174 17 H -0.206 1.206 18 C -0.065 4.065 19 H 0.077 0.923 20 H 0.100 0.900 21 H 0.090 0.910 22 H 0.231 0.769 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.442 5.673 -15.811 21.514 hybrid contribution 0.282 -0.854 -0.067 0.902 sum -13.160 4.818 -15.878 21.178 Atomic orbital electron populations 1.22394 0.93669 1.03375 1.03326 1.21209 0.92974 0.82699 0.93774 1.86693 1.77398 1.22996 1.49914 1.22260 0.95535 1.01696 0.98199 1.21503 0.96365 1.01193 0.95548 1.22276 1.00234 0.94799 0.91139 1.61933 1.08013 1.54351 1.02177 1.21828 0.95584 0.96054 0.91184 1.19556 0.93157 0.96058 0.95261 1.21408 0.94280 1.42036 0.99705 0.95027 1.25979 1.00006 0.94051 0.98905 1.70063 1.15086 1.45482 1.28335 0.85648 0.77600 0.80032 0.79371 1.18738 1.17401 1.20598 1.22165 0.87357 0.98407 0.98603 0.92323 0.89965 0.90994 0.76853 0.90813 0.89008 0.90032 0.91659 0.91698 0.95474 0.96380 0.92633 0.96327 0.95807 0.92339 0.93538 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 8.82 71.98 0.64 -2.06 16 2 C 0.13 2.98 1.00 -10.74 -0.01 2.97 16 3 O -0.56 -13.82 12.31 -148.98 -1.83 -15.65 16 4 C -0.14 -2.66 4.99 30.67 0.15 -2.51 16 5 C -0.11 -2.66 5.94 30.64 0.18 -2.47 16 6 C 0.04 1.43 4.85 86.32 0.42 1.84 16 7 N -0.54 -19.89 4.69 -896.36 -4.20 -24.09 16 8 C 0.08 3.56 5.21 86.30 0.45 4.01 16 9 C 0.00 -0.14 3.29 29.85 0.10 -0.04 16 10 C -0.54 -32.37 9.66 25.60 0.25 -32.12 16 11 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 12 C 0.01 0.46 5.47 84.66 0.46 0.93 16 13 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 14 Si 0.95 45.69 27.47 68.60 1.88 47.58 16 15 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 C 0.06 1.87 4.40 86.33 0.38 2.25 16 19 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 20 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 21 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 22 H 0.38 5.71 9.05 -74.06 -0.67 5.04 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.06 1.75 7.80 -2.39 -0.02 1.73 16 27 H 0.06 2.39 5.81 -2.38 -0.01 2.37 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.06 2.53 8.14 -2.38 -0.02 2.52 16 31 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 32 H 0.02 1.15 5.64 -2.39 -0.01 1.13 16 33 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 Total: -1.00 -70.88 274.08 -0.51 -71.39 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.32 Total: 8.62 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.02 Total: -27.21 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -3.90 Total: -84.73 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -1.83 Total: -15.65 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.58 kcal Total: -70.88 -0.51 -71.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161005984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.767 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds