Wall clock time and date at job start Thu Apr 9 2020 11:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46931 * 2 1 4 4 O 1.42897 * 109.47044 * 59.99558 * 3 2 1 5 5 N 1.46501 * 109.47523 * 240.00047 * 2 1 3 6 6 C 1.34772 * 120.00286 * 60.89573 * 5 2 1 7 7 O 1.21691 * 119.99531 * 4.84709 * 6 5 2 8 8 C 1.46375 * 120.00119 * 184.84193 * 6 5 2 9 9 H 1.07997 * 120.00013 * 0.02562 * 8 6 5 10 10 C 1.40046 * 119.99784 * 179.97438 * 8 6 5 11 11 N 1.30674 * 120.00408 * 0.02562 * 10 8 6 12 12 Si 1.86804 * 119.99800 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47153 * 60.00438 * 12 10 8 14 14 H 1.48501 * 109.46782 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47063 * 300.00311 * 12 10 8 16 16 C 1.53005 * 109.47259 * 119.99553 * 2 1 3 17 17 C 1.52999 * 117.49968 * 134.90731 * 16 2 1 18 18 C 1.52995 * 117.49721 * 66.24584 * 16 2 1 19 19 H 1.09001 * 109.47236 * 60.00517 * 1 2 3 20 20 H 1.08999 * 109.46992 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47412 * 300.00293 * 1 2 3 22 22 H 1.08992 * 109.46907 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.46738 * 299.99788 * 3 2 1 24 24 H 0.96709 * 113.99510 * 180.02562 * 4 3 2 25 25 H 0.97000 * 119.99680 * 240.90316 * 5 2 1 26 26 H 0.96998 * 120.00119 * 180.02562 * 11 10 8 27 27 H 1.09004 * 115.54780 * 280.57921 * 16 2 1 28 28 H 1.08996 * 117.49574 * 0.02562 * 17 16 2 29 29 H 1.08997 * 117.50012 * 145.01836 * 17 16 2 30 30 H 1.08994 * 117.50306 * 214.98277 * 18 16 2 31 31 H 1.09006 * 117.49873 * 0.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5635 2.1162 1.1667 5 7 2.0184 -0.6906 -1.1962 6 6 1.7079 -0.2198 -2.4202 7 8 1.0970 0.8267 -2.5325 8 6 2.1054 -0.9671 -3.6144 9 1 2.6472 -1.8959 -3.5146 10 6 1.7822 -0.4780 -4.8862 11 7 1.1262 0.6457 -5.0070 12 14 2.2890 -1.4321 -6.4102 13 1 1.6711 -2.7820 -6.3773 14 1 1.8314 -0.7071 -7.6228 15 1 3.7676 -1.5651 -6.4420 16 6 2.0400 -0.7212 1.2493 17 6 3.1788 -1.7269 1.0690 18 6 1.7601 -2.2210 1.3629 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 3.1298 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.8485 3.0380 1.2326 25 1 2.5652 -1.4868 -1.1071 26 1 0.9021 0.9842 -5.8879 27 1 2.0265 -0.1356 2.1686 28 1 3.5649 -1.8745 0.0605 29 1 3.9143 -1.8033 1.8698 30 1 1.5628 -2.6223 2.3569 31 1 1.2129 -2.6941 0.5474 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379378863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:38 Heat of formation + Delta-G solvation = -86.808852 kcal Electronic energy + Delta-G solvation = -14875.171168 eV Core-core repulsion = 12349.542171 eV Total energy + Delta-G solvation = -2525.628997 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.80404 -38.18670 -37.22462 -34.83967 -33.99483 -31.60532 -28.18787 -27.29475 -24.12717 -23.17091 -22.35257 -19.72339 -19.44001 -18.27608 -17.56392 -16.48506 -16.24321 -15.77322 -15.29925 -15.21609 -14.66633 -14.20799 -13.82060 -13.30599 -13.17643 -13.00704 -12.69980 -12.60811 -12.41008 -12.25178 -12.01464 -11.87507 -11.13159 -10.96504 -10.94287 -10.80501 -9.61633 -9.41477 -8.25357 -6.83063 1.40020 1.42873 1.54082 2.24437 2.49020 2.82512 3.02839 3.52310 3.68814 3.77486 4.01590 4.09065 4.23680 4.38573 4.57730 4.78377 4.80479 4.89400 4.92199 5.01667 5.20194 5.28440 5.32904 5.34651 5.43965 5.89771 6.25667 6.35239 6.87228 6.89458 7.57802 8.53090 8.70760 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039083 B = 0.009475 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.255814 B = 2954.429728 C = 3381.336954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.213 3.787 3 C 0.078 3.922 4 O -0.574 6.574 5 N -0.747 5.747 6 C 0.543 3.457 7 O -0.612 6.612 8 C -0.577 4.577 9 H 0.082 0.918 10 C 0.033 3.967 11 N -0.818 5.818 12 Si 0.992 3.008 13 H -0.257 1.257 14 H -0.275 1.275 15 H -0.255 1.255 16 C -0.156 4.156 17 C -0.176 4.176 18 C -0.168 4.168 19 H 0.031 0.969 20 H 0.050 0.950 21 H 0.068 0.932 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.392 0.608 25 H 0.393 0.607 26 H 0.273 0.727 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 -4.305 9.516 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.126 3.874 3 C -0.001 4.001 4 O -0.381 6.381 5 N -0.406 5.406 6 C 0.347 3.653 7 O -0.499 6.499 8 C -0.613 4.613 9 H 0.100 0.900 10 C -0.183 4.183 11 N -0.447 5.447 12 Si 0.812 3.188 13 H -0.181 1.181 14 H -0.200 1.200 15 H -0.179 1.179 16 C -0.175 4.175 17 C -0.213 4.213 18 C -0.204 4.204 19 H 0.051 0.949 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.240 0.760 25 H 0.230 0.770 26 H 0.083 0.917 27 H 0.140 0.860 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.298 -3.999 9.462 10.789 hybrid contribution 0.499 0.202 -0.981 1.119 sum 3.797 -3.798 8.481 10.038 Atomic orbital electron populations 1.21906 0.95708 1.00852 1.01085 1.19326 0.93250 0.90049 0.84776 1.22396 0.96309 0.94015 0.87357 1.86303 1.78000 1.29974 1.43807 1.46198 1.58094 1.31978 1.04361 1.18471 0.78904 0.84876 0.83092 1.90512 1.46317 1.26353 1.86673 1.21398 1.39824 1.09461 0.90651 0.89959 1.26863 0.92469 0.95186 1.03769 1.70163 1.29994 1.19180 1.25410 0.85149 0.79700 0.78584 0.75353 1.18087 1.20005 1.17924 1.22385 1.04664 0.92324 0.98090 1.23093 0.92128 1.02902 1.03165 1.23017 0.98626 0.95193 1.03607 0.94935 0.93050 0.91282 0.94408 0.94444 0.75970 0.76964 0.91689 0.85988 0.89326 0.86375 0.86452 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.76 8.17 71.98 0.59 -5.17 16 2 C 0.21 8.47 0.69 3.61 0.00 8.47 16 3 C 0.08 3.18 5.83 71.98 0.42 3.60 16 4 O -0.57 -19.06 12.28 -148.98 -1.83 -20.89 16 5 N -0.75 -33.51 4.83 -427.15 -2.07 -35.57 16 6 C 0.54 30.79 7.15 86.36 0.62 31.41 16 7 O -0.61 -39.24 11.25 -4.32 -0.05 -39.29 16 8 C -0.58 -32.45 9.54 24.83 0.24 -32.21 16 9 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 10 C 0.03 1.80 5.50 85.30 0.47 2.27 16 11 N -0.82 -49.55 11.83 21.84 0.26 -49.29 16 12 Si 0.99 40.88 29.56 68.60 2.03 42.91 16 13 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 14 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 15 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 16 C -0.16 -4.75 4.93 -10.79 -0.05 -4.81 16 17 C -0.18 -4.51 9.73 30.62 0.30 -4.21 16 18 C -0.17 -4.31 9.57 30.62 0.29 -4.02 16 19 H 0.03 1.64 6.40 -2.39 -0.02 1.62 16 20 H 0.05 2.02 7.74 -2.39 -0.02 2.00 16 21 H 0.07 2.62 7.68 -2.39 -0.02 2.60 16 22 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 23 H 0.04 1.88 5.94 -2.39 -0.01 1.86 16 24 H 0.39 9.27 9.12 -74.05 -0.68 8.59 16 25 H 0.39 15.57 5.56 -92.71 -0.52 15.05 16 26 H 0.27 15.10 8.29 -92.71 -0.77 14.33 16 27 H 0.12 3.52 7.64 -2.38 -0.02 3.50 16 28 H 0.09 2.48 5.90 -2.39 -0.01 2.46 16 29 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 2.39 8.01 -2.38 -0.02 2.37 16 Total: -1.00 -72.01 256.73 1.18 -70.83 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -0.04 Total: 35.98 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 2.87 Total: -4.67 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -1.81 Total: -84.86 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -1.88 Total: -60.18 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -72.01 1.18 -70.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379378863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.978 kcal (2) G-P(sol) polarization free energy of solvation -72.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds