Wall clock time and date at job start Thu Apr 9 2020 11:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99802 * 2 1 4 4 H 1.48508 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47418 * 299.99652 * 3 2 1 6 6 H 1.48498 * 109.47193 * 60.00004 * 3 2 1 7 7 C 1.37875 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00610 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99894 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99849 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47442 * 324.99811 * 11 10 9 13 13 C 1.53001 * 109.47043 * 84.99760 * 11 10 9 14 14 O 1.42910 * 109.47127 * 64.44235 * 13 11 10 15 15 C 1.53001 * 109.47006 * 204.99854 * 11 10 9 16 16 C 1.54269 * 110.03291 * 181.28769 * 15 11 10 17 17 C 1.54887 * 104.19581 * 217.10354 * 16 15 11 18 18 C 1.54885 * 102.74779 * 37.94111 * 17 16 15 19 19 C 1.53873 * 110.03323 * 64.12083 * 15 11 10 20 20 H 0.97007 * 120.00338 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47155 * 59.99637 * 9 7 2 22 22 H 1.09005 * 109.46615 * 299.99581 * 9 7 2 23 23 H 1.00896 * 110.99749 * 56.04258 * 10 9 7 24 24 H 1.08997 * 109.47498 * 304.43846 * 13 11 10 25 25 H 1.09000 * 109.47072 * 184.43384 * 13 11 10 26 26 H 0.96691 * 113.99561 * 179.97438 * 14 13 11 27 27 H 1.09009 * 110.01468 * 302.72823 * 15 11 10 28 28 H 1.08998 * 110.48223 * 335.78630 * 16 15 11 29 29 H 1.09003 * 110.48654 * 98.42623 * 16 15 11 30 30 H 1.09000 * 110.75354 * 279.63035 * 17 16 15 31 31 H 1.08995 * 110.91319 * 156.33284 * 17 16 15 32 32 H 1.09000 * 110.49183 * 203.37714 * 18 17 16 33 33 H 1.08997 * 110.59871 * 80.79054 * 18 17 16 34 34 H 1.09001 * 110.02918 * 238.57347 * 19 15 11 35 35 H 1.09000 * 110.03112 * 359.97438 * 19 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0024 12 1 0.5919 -4.8247 0.5914 13 6 1.1523 -5.2964 -1.4345 14 8 2.3533 -5.5053 -2.1802 15 6 2.4112 -5.9781 0.6132 16 6 1.7003 -7.3470 0.5908 17 6 2.1298 -8.0199 1.9182 18 6 2.1400 -6.8342 2.9147 19 6 2.6907 -5.6521 2.0908 20 1 -0.4851 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8399 -3.5482 0.7835 24 1 0.5727 -4.4968 -1.8957 25 1 0.5644 -6.2142 -1.4281 26 1 2.2051 -5.7560 -3.1022 27 1 3.3485 -6.0342 0.0594 28 1 0.6187 -7.2147 0.5627 29 1 2.0356 -7.9372 -0.2620 30 1 3.1247 -8.4555 1.8260 31 1 1.4058 -8.7751 2.2236 32 1 2.7961 -7.0501 3.7579 33 1 1.1303 -6.6182 3.2639 34 1 3.7637 -5.5508 2.2542 35 1 2.1814 -4.7305 2.3726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386184819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:11 Heat of formation + Delta-G solvation = -72.410522 kcal Electronic energy + Delta-G solvation = -14731.245447 eV Core-core repulsion = 12342.073903 eV Total energy + Delta-G solvation = -2389.171544 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.81908 -36.13094 -34.54540 -32.43559 -29.77654 -28.53957 -26.63805 -25.68985 -22.26726 -20.68866 -20.34653 -19.04242 -16.81554 -16.52432 -15.65209 -15.25632 -14.60602 -14.34077 -13.57190 -13.12908 -13.05497 -12.81092 -12.58483 -11.89741 -11.60887 -11.21040 -10.98948 -10.94719 -10.87045 -10.68232 -10.51850 -10.45408 -10.24921 -9.92008 -9.78314 -9.33548 -9.08127 -8.45289 -7.15646 -6.00316 -4.01406 3.33056 3.40076 3.46099 4.45735 4.74135 4.80827 4.84959 4.95193 5.31215 5.35775 5.46725 5.59574 5.62049 5.75686 5.83584 5.86507 5.98006 5.99879 6.10965 6.15142 6.19760 6.29388 6.40913 6.50240 6.56819 6.82013 7.30250 7.46099 7.84524 8.12950 8.21129 8.50481 8.69923 9.09042 9.63502 11.10971 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038851 B = 0.007187 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.537215 B = 3895.018153 C = 4260.027811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.677 5.677 11 C 0.094 3.906 12 H 0.044 0.956 13 C 0.091 3.909 14 O -0.554 6.554 15 C -0.085 4.085 16 C -0.115 4.115 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.127 4.127 20 H 0.260 0.740 21 H 0.025 0.975 22 H -0.016 1.016 23 H 0.330 0.670 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.363 0.637 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -14.243 1.641 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.308 5.308 11 C -0.017 4.017 12 H 0.062 0.938 13 C 0.012 3.988 14 O -0.357 6.357 15 C -0.104 4.104 16 C -0.154 4.154 17 C -0.162 4.162 18 C -0.161 4.161 19 C -0.165 4.165 20 H 0.070 0.930 21 H 0.044 0.956 22 H 0.001 0.999 23 H 0.148 0.852 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.207 0.793 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.405 -13.930 1.544 14.220 hybrid contribution -0.385 0.881 0.337 1.020 sum 2.020 -13.048 1.881 13.337 Atomic orbital electron populations 1.69973 1.06083 1.26585 1.51341 1.24991 0.94870 0.99359 0.95452 0.86436 0.80131 0.83372 0.77448 1.19634 1.21024 1.21137 1.21245 0.93593 0.90250 1.49738 0.91920 1.19609 0.90657 0.87689 0.95390 1.60617 1.20758 1.00424 1.49048 1.21593 0.95694 0.91178 0.93195 0.93841 1.22207 0.86299 0.97352 0.92944 1.86593 1.31505 1.92233 1.25346 1.21815 0.99860 0.93696 0.95043 1.22395 0.99979 0.95940 0.97041 1.22485 1.00878 0.97213 0.95615 1.22344 1.00846 0.95267 0.97644 1.22275 1.00931 0.98363 0.94892 0.93047 0.95645 0.99875 0.85206 0.93741 0.94914 0.79280 0.89711 0.91961 0.91868 0.91797 0.92131 0.92167 0.91928 0.91870 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.86 9.32 -34.44 -0.32 -15.18 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.19 5.21 5.24 -4.97 -0.03 5.18 16 10 N -0.68 -15.24 6.22 -107.99 -0.67 -15.91 16 11 C 0.09 1.74 1.64 -67.71 -0.11 1.63 16 12 H 0.04 0.84 7.80 -51.93 -0.40 0.44 16 13 C 0.09 1.55 6.45 37.16 0.24 1.79 16 14 O -0.55 -9.30 12.81 -35.23 -0.45 -9.75 16 15 C -0.09 -1.32 2.38 -89.50 -0.21 -1.53 16 16 C -0.12 -1.48 5.31 -25.07 -0.13 -1.61 16 17 C -0.12 -1.40 6.91 -24.74 -0.17 -1.57 16 18 C -0.12 -1.50 6.83 -25.08 -0.17 -1.67 16 19 C -0.13 -1.84 5.64 -25.62 -0.14 -1.98 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.03 0.74 7.37 -51.93 -0.38 0.35 16 22 H -0.02 -0.47 8.05 -51.93 -0.42 -0.89 16 23 H 0.33 7.20 7.00 -39.29 -0.28 6.92 16 24 H 0.04 0.84 7.36 -51.93 -0.38 0.46 16 25 H 0.03 0.47 7.16 -51.93 -0.37 0.10 16 26 H 0.36 4.32 9.12 45.56 0.42 4.73 16 27 H 0.08 1.44 7.69 -51.92 -0.40 1.04 16 28 H 0.06 0.80 7.53 -51.93 -0.39 0.40 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.07 7.09 -51.93 -0.37 0.71 16 LS Contribution 279.50 15.07 4.21 4.21 Total: -1.00 -31.66 279.50 -7.40 -39.06 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.06 Total: 5.34 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.15 Total: -13.47 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.07 Total: -42.51 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.45 Total: -9.75 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.66 -7.40 -39.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386184819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.352 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds