Wall clock time and date at job start Thu Apr 9 2020 11:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99802 * 2 1 4 4 H 1.48508 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47418 * 299.99652 * 3 2 1 6 6 H 1.48498 * 109.47193 * 60.00004 * 3 2 1 7 7 C 1.37875 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00610 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99894 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47313 * 180.02562 * 9 7 2 11 11 C 1.46896 * 110.99849 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47442 * 324.99811 * 11 10 9 13 13 C 1.53001 * 109.47043 * 84.99760 * 11 10 9 14 14 O 1.42910 * 109.47127 * 64.44235 * 13 11 10 15 15 C 1.53001 * 109.47006 * 204.99854 * 11 10 9 16 16 C 1.54269 * 110.03291 * 181.28769 * 15 11 10 17 17 C 1.54887 * 104.19581 * 217.10354 * 16 15 11 18 18 C 1.54885 * 102.74779 * 37.94111 * 17 16 15 19 19 C 1.53873 * 110.03323 * 64.12083 * 15 11 10 20 20 H 0.97007 * 120.00338 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47155 * 59.99637 * 9 7 2 22 22 H 1.09005 * 109.46615 * 299.99581 * 9 7 2 23 23 H 1.00896 * 110.99749 * 56.04258 * 10 9 7 24 24 H 1.08997 * 109.47498 * 304.43846 * 13 11 10 25 25 H 1.09000 * 109.47072 * 184.43384 * 13 11 10 26 26 H 0.96691 * 113.99561 * 179.97438 * 14 13 11 27 27 H 1.09009 * 110.01468 * 302.72823 * 15 11 10 28 28 H 1.08998 * 110.48223 * 335.78630 * 16 15 11 29 29 H 1.09003 * 110.48654 * 98.42623 * 16 15 11 30 30 H 1.09000 * 110.75354 * 279.63035 * 17 16 15 31 31 H 1.08995 * 110.91319 * 156.33284 * 17 16 15 32 32 H 1.09000 * 110.49183 * 203.37714 * 18 17 16 33 33 H 1.08997 * 110.59871 * 80.79054 * 18 17 16 34 34 H 1.09001 * 110.02918 * 238.57347 * 19 15 11 35 35 H 1.09000 * 110.03112 * 359.97438 * 19 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0024 12 1 0.5919 -4.8247 0.5914 13 6 1.1523 -5.2964 -1.4345 14 8 2.3533 -5.5053 -2.1802 15 6 2.4112 -5.9781 0.6132 16 6 1.7003 -7.3470 0.5908 17 6 2.1298 -8.0199 1.9182 18 6 2.1400 -6.8342 2.9147 19 6 2.6907 -5.6521 2.0908 20 1 -0.4851 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 2.8399 -3.5482 0.7835 24 1 0.5727 -4.4968 -1.8957 25 1 0.5644 -6.2142 -1.4281 26 1 2.2051 -5.7560 -3.1022 27 1 3.3485 -6.0342 0.0594 28 1 0.6187 -7.2147 0.5627 29 1 2.0356 -7.9372 -0.2620 30 1 3.1247 -8.4555 1.8260 31 1 1.4058 -8.7751 2.2236 32 1 2.7961 -7.0501 3.7579 33 1 1.1303 -6.6182 3.2639 34 1 3.7637 -5.5508 2.2542 35 1 2.1814 -4.7305 2.3726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386184819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:10 Heat of formation + Delta-G solvation = -96.199223 kcal Electronic energy + Delta-G solvation = -14732.277002 eV Core-core repulsion = 12342.073903 eV Total energy + Delta-G solvation = -2390.203099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11294 -37.40702 -36.31662 -34.48193 -31.36838 -29.66818 -28.15601 -27.44805 -24.18505 -22.24058 -21.37357 -20.39205 -18.61625 -18.14517 -17.14635 -16.66903 -16.40843 -15.71709 -15.09638 -14.69852 -14.47359 -14.21826 -14.14764 -13.74201 -13.23002 -12.92845 -12.68578 -12.53228 -12.21807 -11.96812 -11.85069 -11.76944 -11.46110 -11.44714 -11.19974 -11.14883 -10.74714 -10.65694 -9.05523 -8.24708 -6.35823 1.38980 1.39881 1.54244 2.38551 3.08182 3.42146 3.58436 3.72212 3.78126 3.94827 4.29135 4.34266 4.53506 4.57505 4.62654 4.73769 4.79636 4.86767 4.93293 4.95771 5.03529 5.10149 5.14397 5.23627 5.31332 5.39004 5.48010 5.56424 5.63985 6.02617 6.49071 6.72891 6.88432 7.06595 7.35380 8.87195 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038851 B = 0.007187 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.537215 B = 3895.018153 C = 4260.027811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.212 3.788 10 N -0.678 5.678 11 C 0.087 3.913 12 H 0.032 0.968 13 C 0.096 3.904 14 O -0.569 6.569 15 C -0.078 4.078 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.129 4.129 20 H 0.266 0.734 21 H -0.002 1.002 22 H -0.043 1.043 23 H 0.332 0.668 24 H 0.016 0.984 25 H 0.069 0.931 26 H 0.385 0.615 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -15.205 1.840 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.309 5.309 11 C -0.023 4.023 12 H 0.049 0.951 13 C 0.017 3.983 14 O -0.375 6.375 15 C -0.097 4.097 16 C -0.150 4.150 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.167 4.167 20 H 0.074 0.926 21 H 0.016 0.984 22 H -0.026 1.026 23 H 0.150 0.850 24 H 0.035 0.965 25 H 0.087 0.913 26 H 0.233 0.767 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.313 -14.922 1.728 15.383 hybrid contribution -0.683 1.141 0.245 1.352 sum 2.630 -13.781 1.973 14.168 Atomic orbital electron populations 1.70094 1.07783 1.27966 1.51618 1.25962 0.95827 1.03400 0.94510 0.85266 0.78842 0.78175 0.77893 1.18837 1.20199 1.20063 1.21568 0.93681 0.91583 1.50514 0.92131 1.19217 0.90568 0.89081 0.92733 1.60549 1.20139 1.01101 1.49148 1.21769 0.95626 0.90198 0.94697 0.95063 1.22093 0.86460 0.98011 0.91706 1.86528 1.31406 1.92347 1.27190 1.21732 0.98719 0.94198 0.95001 1.22383 0.99702 0.94245 0.98679 1.22471 1.02053 0.96966 0.93913 1.22343 1.00888 0.94501 0.98092 1.22280 1.01117 0.98434 0.94883 0.92565 0.98388 1.02571 0.84991 0.96519 0.91315 0.76722 0.90962 0.91882 0.90762 0.90753 0.90147 0.90527 0.92195 0.91359 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -31.94 9.32 25.60 0.24 -31.70 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.93 5.24 85.56 0.45 12.38 16 10 N -0.68 -31.52 6.22 -495.56 -3.08 -34.60 16 11 C 0.09 3.28 1.64 44.92 0.07 3.36 16 12 H 0.03 1.26 7.80 -2.39 -0.02 1.24 16 13 C 0.10 3.25 6.45 71.98 0.46 3.72 16 14 O -0.57 -18.53 12.81 -148.98 -1.91 -20.43 16 15 C -0.08 -2.34 2.38 -10.07 -0.02 -2.36 16 16 C -0.11 -2.61 5.31 31.67 0.17 -2.44 16 17 C -0.12 -2.26 6.91 31.88 0.22 -2.04 16 18 C -0.12 -2.70 6.83 31.67 0.22 -2.48 16 19 C -0.13 -3.69 5.64 31.32 0.18 -3.52 16 20 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 21 H 0.00 -0.12 7.37 -2.39 -0.02 -0.14 16 22 H -0.04 -2.61 8.05 -2.38 -0.02 -2.63 16 23 H 0.33 14.97 7.00 -89.70 -0.63 14.34 16 24 H 0.02 0.65 7.36 -2.39 -0.02 0.63 16 25 H 0.07 1.84 7.16 -2.39 -0.02 1.82 16 26 H 0.39 8.58 9.12 -74.06 -0.68 7.90 16 27 H 0.07 2.38 7.69 -2.38 -0.02 2.36 16 28 H 0.06 1.47 7.53 -2.39 -0.02 1.45 16 29 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.33 7.09 -2.39 -0.02 1.31 16 Total: -1.00 -68.64 279.50 -0.47 -69.11 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -0.24 Total: 20.40 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 2.44 Total: -24.57 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -2.80 Total: -92.06 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.91 Total: -20.43 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.64 -0.47 -69.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386184819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.086 kcal (2) G-P(sol) polarization free energy of solvation -68.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds