Wall clock time and date at job start Thu Apr 9 2020 11:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99969 * 2 1 4 4 C 1.53001 * 109.46900 * 90.00221 * 3 2 1 5 5 H 1.08999 * 109.47164 * 60.00014 * 4 3 2 6 6 O 1.42903 * 109.47171 * 299.99748 * 4 3 2 7 7 C 1.53003 * 109.47376 * 180.02562 * 4 3 2 8 8 C 1.53003 * 117.49796 * 248.74870 * 7 4 3 9 9 C 1.52999 * 117.50160 * 180.08544 * 7 4 3 10 10 C 1.34777 * 120.00156 * 180.02562 * 2 1 3 11 11 O 1.21690 * 119.99966 * 179.97438 * 10 2 1 12 12 C 1.46377 * 119.99887 * 0.02562 * 10 2 1 13 13 H 1.07995 * 120.00233 * 359.97438 * 12 10 2 14 14 C 1.40048 * 119.99744 * 179.97438 * 12 10 2 15 15 N 1.30674 * 120.00193 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00048 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46728 * 60.00320 * 16 14 12 18 18 H 1.48495 * 109.47259 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47206 * 300.00444 * 16 14 12 20 20 H 1.08999 * 109.47279 * 89.99778 * 1 2 3 21 21 H 1.09004 * 109.47039 * 209.99535 * 1 2 3 22 22 H 1.08997 * 109.47422 * 329.99508 * 1 2 3 23 23 H 1.08999 * 109.47200 * 330.00257 * 3 2 1 24 24 H 1.08997 * 109.47487 * 210.00311 * 3 2 1 25 25 H 0.96700 * 114.00311 * 300.00378 * 6 4 3 26 26 H 1.09002 * 115.54826 * 34.41110 * 7 4 3 27 27 H 1.09000 * 117.49626 * 359.97438 * 8 7 4 28 28 H 1.09000 * 117.49901 * 145.01813 * 8 7 4 29 29 H 1.08998 * 117.50055 * 214.97770 * 9 7 4 30 30 H 1.09001 * 117.49592 * 359.97370 * 9 7 4 31 31 H 0.96996 * 119.99985 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 1 3.0416 0.9506 1.9563 6 8 1.2039 1.8812 2.1162 7 6 3.2169 3.0357 1.4427 8 6 4.6657 3.0156 1.9344 9 6 3.5719 3.6464 2.7998 10 6 2.1389 -1.1672 -0.0005 11 8 3.3558 -1.1671 -0.0010 12 6 1.4070 -2.4349 -0.0017 13 1 0.3271 -2.4349 -0.0017 14 6 2.1073 -3.6477 -0.0027 15 7 3.4141 -3.6476 -0.0032 16 14 1.1734 -5.2655 -0.0035 17 1 0.3193 -5.3433 -1.2158 18 1 2.1384 -6.3941 -0.0040 19 1 0.3201 -5.3450 1.2093 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.6084 2.0284 -0.5138 24 1 3.1499 1.1385 -0.5139 25 1 0.6267 2.5439 1.7127 26 1 2.9703 3.7207 0.6315 27 1 5.0740 2.0582 2.2582 28 1 5.3720 3.6877 1.4470 29 1 3.5591 4.7333 2.8814 30 1 3.2603 3.1042 3.6926 31 1 3.8991 -4.4877 -0.0036 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388595527.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:33 Heat of formation + Delta-G solvation = -89.561740 kcal Electronic energy + Delta-G solvation = -14522.971256 eV Core-core repulsion = 11997.222885 eV Total energy + Delta-G solvation = -2525.748371 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.21599 -38.82568 -36.52029 -35.37323 -34.58372 -30.92058 -28.23922 -26.86169 -24.59796 -23.23947 -21.80868 -21.09205 -18.48404 -17.75432 -17.37497 -16.90487 -16.42606 -16.14262 -15.50497 -15.09334 -14.60764 -14.20973 -13.74319 -13.35153 -13.12105 -13.05303 -12.72059 -12.65045 -12.44085 -12.13609 -12.07684 -11.99954 -11.45208 -11.16973 -11.01991 -10.89058 -9.78734 -8.97890 -8.28652 -6.83868 1.38384 1.42261 1.53618 2.23756 2.45507 2.73032 2.93460 3.54106 3.63076 3.74302 3.97322 4.05793 4.18372 4.33688 4.48886 4.62513 4.75117 4.81124 4.91309 4.99851 5.03357 5.08424 5.22529 5.29705 5.37313 5.77772 6.15132 6.41858 6.87586 6.94724 7.42425 8.47812 8.67822 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046735 B = 0.007941 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.981345 B = 3525.030572 C = 3835.255342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.646 5.646 3 C 0.101 3.899 4 C 0.135 3.865 5 H 0.045 0.955 6 O -0.562 6.562 7 C -0.189 4.189 8 C -0.185 4.185 9 C -0.151 4.151 10 C 0.536 3.464 11 O -0.632 6.632 12 C -0.572 4.572 13 H 0.091 0.909 14 C 0.027 3.973 15 N -0.823 5.823 16 Si 0.996 3.004 17 H -0.252 1.252 18 H -0.274 1.274 19 H -0.255 1.255 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.100 0.900 24 H 0.049 0.951 25 H 0.385 0.615 26 H 0.132 0.868 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 11.637 1.704 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.381 5.381 3 C -0.023 4.023 4 C 0.074 3.926 5 H 0.063 0.937 6 O -0.369 6.369 7 C -0.208 4.208 8 C -0.222 4.222 9 C -0.188 4.188 10 C 0.342 3.658 11 O -0.520 6.520 12 C -0.608 4.608 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.453 5.453 16 Si 0.815 3.185 17 H -0.176 1.176 18 H -0.199 1.199 19 H -0.179 1.179 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.101 0.899 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.234 0.766 26 H 0.150 0.850 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.751 11.105 2.077 12.256 hybrid contribution -0.075 -0.532 -0.379 0.658 sum -4.826 10.573 1.697 11.745 Atomic orbital electron populations 1.21547 0.79377 1.02611 1.00343 1.47720 1.07045 1.04784 1.78576 1.21796 0.97496 0.86725 0.96269 1.21591 0.84505 0.93780 0.92712 0.93691 1.86600 1.29147 1.64249 1.56904 1.22981 0.98563 0.98931 1.00311 1.22998 0.91811 1.02517 1.04906 1.22884 1.01475 1.01126 0.93292 1.18661 0.86663 0.84438 0.76047 1.90533 1.16204 1.87674 1.57573 1.21533 0.94873 0.90065 1.54353 0.89097 1.27022 0.95527 1.05025 0.91220 1.70195 1.09556 1.28888 1.36669 0.85105 0.78271 0.74800 0.80339 1.17575 1.19885 1.17936 0.93881 0.92631 0.89893 0.88146 0.93241 0.76627 0.85048 0.91269 0.86610 0.85993 0.89992 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.78 9.89 127.77 1.26 5.04 16 2 N -0.65 -30.05 2.80 -851.89 -2.38 -32.43 16 3 C 0.10 3.90 5.08 86.38 0.44 4.34 16 4 C 0.13 4.81 3.43 30.60 0.11 4.91 16 5 H 0.04 2.11 7.90 -2.39 -0.02 2.10 16 6 O -0.56 -17.91 11.97 -148.98 -1.78 -19.69 16 7 C -0.19 -5.04 5.36 -10.79 -0.06 -5.10 16 8 C -0.19 -5.01 10.18 30.62 0.31 -4.70 16 9 C -0.15 -3.54 10.16 30.62 0.31 -3.23 16 10 C 0.54 32.21 7.61 86.36 0.66 32.87 16 11 O -0.63 -43.53 14.60 -4.32 -0.06 -43.59 16 12 C -0.57 -33.40 8.74 24.83 0.22 -33.18 16 13 H 0.09 4.76 6.00 -2.91 -0.02 4.74 16 14 C 0.03 1.54 5.50 85.30 0.47 2.01 16 15 N -0.82 -51.81 11.83 21.84 0.26 -51.56 16 16 Si 1.00 41.97 29.56 68.60 2.03 44.00 16 17 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.05 2.17 6.10 -2.38 -0.01 2.16 16 22 H 0.08 2.34 6.88 -2.39 -0.02 2.32 16 23 H 0.10 2.88 8.07 -2.39 -0.02 2.87 16 24 H 0.05 2.21 7.42 -2.39 -0.02 2.20 16 25 H 0.38 8.18 8.79 -74.06 -0.65 7.53 16 26 H 0.13 2.77 8.11 -2.39 -0.02 2.75 16 27 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 28 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.27 15.61 8.29 -92.71 -0.77 14.84 16 Total: -1.00 -79.74 266.20 2.26 -77.48 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.48 Total: 22.83 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 3.72 Total: 2.97 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -2.12 Total: -83.99 kcal Atomic # 8 Polarization: -61.44 SS G_CDS: -1.85 Total: -63.29 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -79.74 2.26 -77.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388595527.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.081 kcal (2) G-P(sol) polarization free energy of solvation -79.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds