Wall clock time and date at job start Thu Apr 9 2020 11:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21504 * 120.00475 * 0.02562 * 13 12 2 15 15 O 1.34645 * 120.00166 * 180.02562 * 13 12 2 16 16 C 1.45197 * 117.00167 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46796 * 179.97438 * 16 15 13 18 18 C 1.52991 * 117.49973 * 243.62124 * 17 16 15 19 19 C 1.52999 * 117.49533 * 174.99556 * 17 16 15 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 25 25 H 1.08992 * 109.46684 * 299.99828 * 16 15 13 26 26 H 1.08999 * 109.47196 * 60.00234 * 16 15 13 27 27 H 1.08997 * 115.54899 * 29.33451 * 17 16 15 28 28 H 1.09002 * 117.49948 * 359.97438 * 18 17 16 29 29 H 1.09002 * 117.50020 * 145.02634 * 18 17 16 30 30 H 1.08994 * 117.49947 * 214.97824 * 19 17 16 31 31 H 1.09000 * 117.50204 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8576 1.1607 2.4118 15 8 2.5963 -0.6526 3.4565 16 6 2.7091 0.1340 4.6717 17 6 3.2312 -0.7511 5.8053 18 6 2.3074 -0.9841 7.0024 19 6 3.5318 -0.0778 7.1459 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7088 1.1611 -3.4845 24 1 2.2490 -1.6316 1.1527 25 1 3.4009 0.9599 4.5069 26 1 1.7295 0.5287 4.9413 27 1 3.8769 -1.5743 5.4997 28 1 1.3278 -0.5065 6.9826 29 1 2.3451 -1.9610 7.4846 30 1 4.3748 -0.4585 7.7225 31 1 3.3572 0.9955 7.2205 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388787477.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:50 Heat of formation + Delta-G solvation = -67.658535 kcal Electronic energy + Delta-G solvation = -13961.933304 eV Core-core repulsion = 11437.134728 eV Total energy + Delta-G solvation = -2524.798576 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.72744 -37.61046 -35.92248 -34.58631 -32.41461 -29.13502 -27.27319 -25.26933 -22.56537 -21.91206 -20.71830 -19.79805 -18.38028 -16.54271 -16.07591 -15.93893 -15.17179 -14.73208 -14.29276 -13.63196 -13.12908 -12.80819 -12.32481 -11.84019 -11.70177 -11.29452 -11.13159 -11.00959 -10.84400 -10.66528 -10.58314 -10.34368 -10.24146 -9.85552 -9.70964 -9.08481 -8.58257 -8.00978 -6.14333 -4.23676 2.84187 3.26551 3.31370 3.33599 3.61388 3.68999 4.31709 4.56573 4.74269 4.77205 5.18110 5.20759 5.35787 5.44760 5.53733 5.65417 5.70732 5.93200 6.06428 6.71928 6.89669 6.97118 7.11573 7.41480 7.53593 7.68574 7.88113 8.11467 8.60910 8.76206 9.21852 9.44746 10.91918 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.071443 B = 0.005595 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.827428 B = 5003.068069 C = 5180.461394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.279 3.721 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.906 3.094 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.275 1.275 12 N -0.687 5.687 13 C 0.635 3.365 14 O -0.586 6.586 15 O -0.380 6.380 16 C 0.119 3.881 17 C -0.155 4.155 18 C -0.178 4.178 19 C -0.171 4.171 20 H 0.016 0.984 21 H 0.093 0.907 22 H 0.029 0.971 23 H 0.266 0.734 24 H 0.395 0.605 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 -3.915 13.426 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.179 3.821 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.733 3.267 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.343 5.343 13 C 0.387 3.613 14 O -0.476 6.476 15 O -0.295 6.295 16 C 0.044 3.956 17 C -0.173 4.173 18 C -0.215 4.215 19 C -0.208 4.208 20 H 0.035 0.965 21 H 0.112 0.888 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.228 0.772 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.870 -3.177 13.341 14.011 hybrid contribution 0.366 -0.771 -0.808 1.175 sum 3.236 -3.948 12.533 13.532 Atomic orbital electron populations 1.22130 0.98250 0.99397 1.01073 1.18832 0.91093 0.93828 0.78340 0.93101 1.21161 1.32738 1.13455 0.90010 0.91842 1.24880 0.94750 0.94969 0.99042 1.69895 1.35689 1.22391 1.24127 0.86439 0.79177 0.79554 0.81522 1.21094 1.20117 1.20089 1.45568 1.67404 1.13984 1.07298 1.18380 0.77584 0.84217 0.81163 1.90930 1.56535 1.15131 1.85004 1.86191 1.80701 1.43915 1.18685 1.22257 1.01102 0.92120 0.80145 1.22163 1.03924 1.02732 0.88514 1.23104 0.95308 1.01319 1.01738 1.22983 1.00011 0.99319 0.98510 0.96532 0.88835 0.95208 0.92416 0.77176 0.91084 0.91445 0.86588 0.88499 0.88537 0.88299 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.44 16 2 C 0.28 7.28 2.56 -69.09 -0.18 7.10 16 3 H 0.05 1.51 7.58 -51.92 -0.39 1.12 16 4 C -0.54 -14.32 8.73 -34.44 -0.30 -14.62 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.84 11.32 55.43 0.63 -24.21 16 8 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.69 -15.42 5.07 -59.87 -0.30 -15.72 16 13 C 0.63 14.10 8.71 54.06 0.47 14.57 16 14 O -0.59 -14.75 15.79 -19.27 -0.30 -15.05 16 15 O -0.38 -7.01 10.27 -40.34 -0.41 -7.43 16 16 C 0.12 1.78 5.76 37.16 0.21 2.00 16 17 C -0.16 -1.78 6.07 -90.62 -0.55 -2.33 16 18 C -0.18 -1.70 10.18 -26.73 -0.27 -1.98 16 19 C -0.17 -1.54 10.25 -26.73 -0.27 -1.81 16 20 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 21 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.40 7.85 8.65 -40.82 -0.35 7.50 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 27 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.10 0.92 8.03 -51.93 -0.42 0.51 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 271.36 15.07 4.09 4.09 Total: -1.00 -30.03 271.36 -6.35 -36.39 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.39 Total: 5.14 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.64 Total: 1.20 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.32 Total: -39.93 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.72 Total: -22.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.03 -6.35 -36.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388787477.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.273 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds