Wall clock time and date at job start Thu Apr 9 2020 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47020 * 2 1 4 4 O 1.42896 * 110.78147 * 61.75204 * 3 2 1 5 5 C 1.54593 * 110.72605 * 298.50125 * 3 2 1 6 6 C 1.53988 * 105.13853 * 219.68418 * 5 3 2 7 7 N 1.48064 * 107.14543 * 358.91767 * 6 5 3 8 8 C 1.46902 * 111.16437 * 145.63064 * 7 6 5 9 9 C 1.53003 * 109.46914 * 52.60365 * 8 7 6 10 10 C 1.50695 * 109.47240 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00226 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99706 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99784 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47196 * 90.00348 * 14 12 10 16 16 H 1.48504 * 109.46815 * 209.99694 * 14 12 10 17 17 H 1.48494 * 109.47543 * 329.99986 * 14 12 10 18 18 C 1.48537 * 105.73449 * 25.07892 * 7 6 5 19 19 H 1.09000 * 109.47365 * 299.99760 * 1 2 3 20 20 H 1.08999 * 109.47177 * 59.99880 * 1 2 3 21 21 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47365 * 240.00240 * 2 1 3 23 23 H 1.08999 * 109.47177 * 120.00120 * 2 1 3 24 24 H 0.96704 * 114.00298 * 303.24675 * 4 3 2 25 25 H 1.09005 * 110.30927 * 338.60202 * 5 3 2 26 26 H 1.08997 * 110.30746 * 100.76636 * 5 3 2 27 27 H 1.09006 * 109.91426 * 118.12915 * 6 5 3 28 28 H 1.09000 * 109.91854 * 239.41907 * 6 5 3 29 29 H 1.08995 * 109.46938 * 172.60380 * 8 7 6 30 30 H 1.08994 * 109.47047 * 292.60901 * 8 7 6 31 31 H 1.08999 * 109.47096 * 300.00477 * 9 8 7 32 32 H 1.09003 * 109.46926 * 60.00144 * 9 8 7 33 33 H 0.97006 * 119.99710 * 179.97438 * 13 12 10 34 34 H 1.09002 * 110.66696 * 202.50331 * 18 7 6 35 35 H 1.09001 * 110.66368 * 79.54170 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6128 2.1313 1.1769 5 6 1.5718 2.1884 -1.2707 6 6 2.7753 3.0487 -1.6983 7 7 3.8502 2.8195 -0.7062 8 6 5.1750 2.8655 -1.3394 9 6 5.3148 4.1647 -2.1354 10 6 6.6740 4.2122 -2.7845 11 1 7.3684 3.3971 -2.6437 12 6 7.0311 5.2963 -3.5581 13 7 6.1856 6.2890 -3.7290 14 14 8.7156 5.3548 -4.3632 15 1 8.6426 4.7329 -5.7097 16 1 9.1530 6.7680 -4.4938 17 1 9.6905 4.6103 -3.5263 18 6 3.5838 1.4782 -0.1262 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.6540 2.1381 1.3026 25 1 1.3180 1.4759 -2.0556 26 1 0.7152 2.8227 -1.0430 27 1 3.1162 2.7444 -2.6880 28 1 2.4944 4.1018 -1.7070 29 1 5.9466 2.8255 -0.5707 30 1 5.2864 2.0143 -2.0109 31 1 4.5431 4.2047 -2.9041 32 1 5.2033 5.0160 -1.4639 33 1 6.4369 7.0519 -4.2730 34 1 4.0522 1.3828 0.8533 35 1 3.9332 0.6930 -0.7966 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388791305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:55 Heat of formation + Delta-G solvation = -61.321313 kcal Electronic energy + Delta-G solvation = -14628.557911 eV Core-core repulsion = 12239.867231 eV Total energy + Delta-G solvation = -2388.690679 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.47670 -36.14077 -33.31646 -32.72192 -30.77543 -28.96232 -27.46738 -24.30635 -23.00611 -21.70305 -20.25695 -19.21962 -16.81637 -16.38787 -15.58694 -14.96560 -14.53308 -14.29479 -13.96111 -13.65229 -13.06929 -12.53171 -12.41581 -12.18353 -12.00184 -11.82101 -11.28426 -11.08998 -10.96593 -10.92360 -10.68698 -10.53965 -10.35325 -9.92238 -9.74869 -9.28944 -9.09215 -8.33113 -7.69933 -5.97676 -4.00118 3.33285 3.39454 3.43170 4.21328 4.41812 4.55317 4.66988 4.84055 4.96004 5.09892 5.25994 5.37655 5.39274 5.57615 5.71639 5.75258 5.87453 5.91735 5.98775 6.10532 6.12989 6.26985 6.34808 6.47373 6.57444 6.96606 7.51477 7.54260 7.75354 7.81448 7.90476 8.09787 8.45572 9.06907 9.63407 11.13801 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.072417 B = 0.005752 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.555578 B = 4866.967902 C = 4956.508094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.146 4.146 3 C 0.128 3.872 4 O -0.541 6.541 5 C -0.155 4.155 6 C 0.044 3.956 7 N -0.512 5.512 8 C 0.053 3.947 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.047 3.953 19 H 0.055 0.945 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.367 0.633 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.020 0.980 31 H 0.018 0.982 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.083 0.917 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.171 -11.474 5.770 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C 0.087 3.913 4 O -0.346 6.346 5 C -0.193 4.193 6 C -0.084 4.084 7 N -0.236 5.236 8 C -0.075 4.075 9 C -0.014 4.014 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.081 4.081 19 H 0.074 0.926 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.214 0.786 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.520 -10.794 6.144 16.276 hybrid contribution 0.373 -0.594 -1.297 1.475 sum -10.147 -11.387 4.847 16.004 Atomic orbital electron populations 1.21798 0.95610 1.01972 1.01947 1.22133 0.96411 0.96881 1.02945 1.22080 0.94801 0.89583 0.84833 1.86642 1.26658 1.77849 1.43495 1.23160 0.99281 0.99197 0.97691 1.22759 0.90552 1.00449 0.94658 1.64876 1.03161 1.25156 1.30365 1.22517 0.88117 1.00235 0.96585 1.19158 0.96690 0.91191 0.94318 1.21196 1.00312 1.04429 1.30111 0.92764 1.24996 0.97157 0.95605 0.96556 1.69976 1.35333 1.08392 1.39590 0.86588 0.84478 0.77200 0.79692 1.20734 1.21181 1.19860 1.23187 0.92486 0.91837 1.00580 0.92638 0.92280 0.92457 0.90981 0.91116 0.78642 0.91195 0.90897 0.93414 0.90326 0.91819 0.96158 0.96405 0.95702 0.93009 0.89907 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.45 37.16 0.35 -0.92 16 2 C -0.15 -1.49 5.13 -26.73 -0.14 -1.62 16 3 C 0.13 1.72 1.07 -88.76 -0.09 1.62 16 4 O -0.54 -7.56 13.12 -35.23 -0.46 -8.02 16 5 C -0.15 -2.12 5.28 -25.38 -0.13 -2.26 16 6 C 0.04 0.80 5.35 -2.67 -0.01 0.78 16 7 N -0.51 -10.15 5.40 -230.31 -1.24 -11.39 16 8 C 0.05 1.18 4.94 -3.82 -0.02 1.16 16 9 C 0.02 0.64 4.72 -27.88 -0.13 0.51 16 10 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 11 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 14 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.05 0.76 5.72 -1.90 -0.01 0.75 16 19 H 0.05 0.40 6.84 -51.93 -0.36 0.05 16 20 H 0.06 0.48 7.16 -51.93 -0.37 0.11 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.37 3.58 7.45 45.56 0.34 3.92 16 25 H 0.07 0.85 7.61 -51.93 -0.39 0.45 16 26 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.05 0.91 7.14 -51.93 -0.37 0.54 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.02 0.44 7.89 -51.93 -0.41 0.03 16 31 H 0.02 0.50 6.63 -51.93 -0.34 0.15 16 32 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.05 0.78 7.74 -51.93 -0.40 0.38 16 LS Contribution 278.45 15.07 4.20 4.20 Total: -1.00 -31.92 278.45 -7.62 -39.55 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.23 Total: -0.85 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.60 Total: -13.82 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.51 Total: -37.98 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.46 Total: -8.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.92 -7.62 -39.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388791305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.773 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds