Wall clock time and date at job start Thu Apr 9 2020 11:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47020 * 2 1 4 4 O 1.42896 * 110.78147 * 61.75204 * 3 2 1 5 5 C 1.54593 * 110.72605 * 298.50125 * 3 2 1 6 6 C 1.53988 * 105.13853 * 219.68418 * 5 3 2 7 7 N 1.48064 * 107.14543 * 358.91767 * 6 5 3 8 8 C 1.46902 * 111.16437 * 145.63064 * 7 6 5 9 9 C 1.53003 * 109.46914 * 52.60365 * 8 7 6 10 10 C 1.50695 * 109.47240 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00226 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99706 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99784 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47196 * 90.00348 * 14 12 10 16 16 H 1.48504 * 109.46815 * 209.99694 * 14 12 10 17 17 H 1.48494 * 109.47543 * 329.99986 * 14 12 10 18 18 C 1.48537 * 105.73449 * 25.07892 * 7 6 5 19 19 H 1.09000 * 109.47365 * 299.99760 * 1 2 3 20 20 H 1.08999 * 109.47177 * 59.99880 * 1 2 3 21 21 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47365 * 240.00240 * 2 1 3 23 23 H 1.08999 * 109.47177 * 120.00120 * 2 1 3 24 24 H 0.96704 * 114.00298 * 303.24675 * 4 3 2 25 25 H 1.09005 * 110.30927 * 338.60202 * 5 3 2 26 26 H 1.08997 * 110.30746 * 100.76636 * 5 3 2 27 27 H 1.09006 * 109.91426 * 118.12915 * 6 5 3 28 28 H 1.09000 * 109.91854 * 239.41907 * 6 5 3 29 29 H 1.08995 * 109.46938 * 172.60380 * 8 7 6 30 30 H 1.08994 * 109.47047 * 292.60901 * 8 7 6 31 31 H 1.08999 * 109.47096 * 300.00477 * 9 8 7 32 32 H 1.09003 * 109.46926 * 60.00144 * 9 8 7 33 33 H 0.97006 * 119.99710 * 179.97438 * 13 12 10 34 34 H 1.09002 * 110.66696 * 202.50331 * 18 7 6 35 35 H 1.09001 * 110.66368 * 79.54170 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6128 2.1313 1.1769 5 6 1.5718 2.1884 -1.2707 6 6 2.7753 3.0487 -1.6983 7 7 3.8502 2.8195 -0.7062 8 6 5.1750 2.8655 -1.3394 9 6 5.3148 4.1647 -2.1354 10 6 6.6740 4.2122 -2.7845 11 1 7.3684 3.3971 -2.6437 12 6 7.0311 5.2963 -3.5581 13 7 6.1856 6.2890 -3.7290 14 14 8.7156 5.3548 -4.3632 15 1 8.6426 4.7329 -5.7097 16 1 9.1530 6.7680 -4.4938 17 1 9.6905 4.6103 -3.5263 18 6 3.5838 1.4782 -0.1262 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.6540 2.1381 1.3026 25 1 1.3180 1.4759 -2.0556 26 1 0.7152 2.8227 -1.0430 27 1 3.1162 2.7444 -2.6880 28 1 2.4944 4.1018 -1.7070 29 1 5.9466 2.8255 -0.5707 30 1 5.2864 2.0143 -2.0109 31 1 4.5431 4.2047 -2.9041 32 1 5.2033 5.0160 -1.4639 33 1 6.4369 7.0519 -4.2730 34 1 4.0522 1.3828 0.8533 35 1 3.9332 0.6930 -0.7966 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388791305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:54 Heat of formation + Delta-G solvation = -85.518148 kcal Electronic energy + Delta-G solvation = -14629.607164 eV Core-core repulsion = 12239.867231 eV Total energy + Delta-G solvation = -2389.739933 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.70334 -37.52737 -35.25957 -33.85823 -32.37484 -30.44746 -28.90669 -26.17096 -24.03802 -23.39560 -21.59489 -20.63718 -18.59107 -17.90173 -16.78467 -16.56750 -16.30500 -15.65719 -15.15791 -14.90303 -14.46693 -14.17617 -13.87050 -13.62234 -13.22878 -12.95489 -12.86488 -12.65106 -12.46179 -12.37076 -12.13427 -11.91280 -11.75054 -11.60979 -11.36109 -11.13047 -10.75067 -10.57896 -9.27066 -8.22262 -6.34552 1.38964 1.41179 1.52531 2.39091 3.06735 3.10971 3.28575 3.63008 3.69266 3.91762 4.19105 4.28373 4.43572 4.45606 4.51279 4.62868 4.71394 4.80862 4.84044 4.90069 4.98700 5.01038 5.12069 5.16245 5.29183 5.41006 5.43438 5.60293 5.75406 6.00205 6.12342 6.29204 6.81852 6.95374 7.34858 8.90124 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.072417 B = 0.005752 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.555578 B = 4866.967902 C = 4956.508094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.135 3.865 4 O -0.562 6.562 5 C -0.144 4.144 6 C 0.040 3.960 7 N -0.532 5.532 8 C 0.069 3.931 9 C 0.033 3.967 10 C -0.547 4.547 11 H 0.061 0.939 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.970 3.030 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.041 3.959 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.069 0.931 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.385 0.615 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.027 0.973 31 H -0.003 1.003 32 H -0.013 1.013 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.451 -13.177 5.779 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.176 4.176 3 C 0.094 3.906 4 O -0.370 6.370 5 C -0.182 4.182 6 C -0.088 4.088 7 N -0.256 5.256 8 C -0.059 4.059 9 C -0.004 4.004 10 C -0.586 4.586 11 H 0.079 0.921 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.794 3.206 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.087 4.087 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.235 0.765 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.016 0.984 32 H 0.006 0.994 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.826 -12.516 6.167 17.660 hybrid contribution 0.417 -0.024 -1.259 1.326 sum -10.409 -12.540 4.909 17.020 Atomic orbital electron populations 1.21800 0.93765 1.03043 1.02534 1.22061 0.97927 0.94152 1.03411 1.22012 0.92662 0.91545 0.84364 1.86592 1.28632 1.78219 1.43580 1.23130 0.97404 0.99095 0.98584 1.22740 0.92147 1.00073 0.93823 1.64762 1.02187 1.28158 1.30540 1.22165 0.89961 0.97732 0.96023 1.18971 0.95662 0.92300 0.93454 1.21617 1.01225 1.05020 1.30694 0.92085 1.26001 1.01714 0.94956 0.96997 1.70118 1.37717 1.09111 1.40286 0.85380 0.78891 0.77511 0.78845 1.19526 1.20624 1.18693 1.23319 0.95155 0.89990 1.00222 0.91717 0.92087 0.91181 0.90486 0.90746 0.76457 0.88978 0.89447 0.94959 0.92825 0.92088 0.95528 0.98434 0.99434 0.92678 0.90242 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.45 71.98 0.68 -1.28 16 2 C -0.14 -2.38 5.13 30.60 0.16 -2.22 16 3 C 0.14 3.34 1.07 -9.59 -0.01 3.33 16 4 O -0.56 -14.61 13.12 -148.98 -1.95 -16.56 16 5 C -0.14 -3.70 5.28 31.47 0.17 -3.54 16 6 C 0.04 1.49 5.35 86.41 0.46 1.95 16 7 N -0.53 -21.43 5.40 -882.57 -4.77 -26.20 16 8 C 0.07 3.15 4.94 86.30 0.43 3.58 16 9 C 0.03 1.88 4.72 29.85 0.14 2.02 16 10 C -0.55 -32.34 9.11 25.60 0.23 -32.11 16 11 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 12 C 0.00 0.08 5.46 84.66 0.46 0.54 16 13 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 14 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 18 C 0.04 1.28 5.72 86.65 0.50 1.77 16 19 H 0.06 0.70 6.84 -2.39 -0.02 0.69 16 20 H 0.06 0.77 7.16 -2.39 -0.02 0.75 16 21 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 22 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.39 6.53 7.45 -74.05 -0.55 5.98 16 25 H 0.09 1.98 7.61 -2.38 -0.02 1.96 16 26 H 0.09 2.00 8.08 -2.39 -0.02 1.98 16 27 H 0.03 1.27 7.14 -2.38 -0.02 1.25 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.03 1.17 7.89 -2.39 -0.02 1.15 16 31 H 0.00 -0.16 6.63 -2.39 -0.02 -0.17 16 32 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.06 1.84 7.74 -2.39 -0.02 1.82 16 Total: -1.00 -69.87 278.45 -0.70 -70.57 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.50 Total: 9.05 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 3.21 Total: -25.94 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -4.48 Total: -84.22 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -1.95 Total: -16.56 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -69.87 -0.70 -70.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388791305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.946 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds