Wall clock time and date at job start Thu Apr 9 2020 11:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46904 * 109.47015 * 119.99841 * 2 1 3 13 13 C 1.46899 * 110.99846 * 275.00091 * 12 2 1 14 14 C 1.53003 * 109.46947 * 180.02562 * 13 12 2 15 15 C 1.53175 * 109.54399 * 294.55529 * 14 13 12 16 16 C 1.53087 * 109.16716 * 183.15455 * 15 14 13 17 17 O 1.42902 * 109.41696 * 57.60804 * 16 15 14 18 18 C 1.42909 * 114.09462 * 298.84731 * 17 16 15 19 19 C 1.53088 * 109.41871 * 61.15895 * 18 17 16 20 20 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 21 21 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.00894 * 110.99952 * 38.95386 * 12 2 1 25 25 H 1.08998 * 109.47462 * 299.99625 * 13 12 2 26 26 H 1.08996 * 109.47253 * 59.99840 * 13 12 2 27 27 H 1.08996 * 109.54688 * 54.82040 * 14 13 12 28 28 H 1.09005 * 109.52182 * 303.05983 * 15 14 13 29 29 H 1.09000 * 109.52345 * 63.24381 * 15 14 13 30 30 H 1.09002 * 109.48063 * 297.62976 * 16 15 14 31 31 H 1.08999 * 109.48542 * 177.59009 * 16 15 14 32 32 H 1.08997 * 109.47694 * 301.16833 * 18 17 16 33 33 H 1.09007 * 109.48843 * 181.14248 * 18 17 16 34 34 H 1.08994 * 109.52392 * 182.48829 * 19 18 17 35 35 H 1.08996 * 109.52757 * 62.28883 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5962 -0.5328 3.5742 15 6 1.5793 -1.6044 3.9791 16 6 2.0640 -2.3015 5.2530 17 8 2.2449 -1.3309 6.2861 18 6 3.2191 -0.3304 5.9826 19 6 2.7808 0.4459 4.7381 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.9028 -0.5285 -4.4375 24 1 1.4496 -1.4979 1.4101 25 1 2.7588 1.0462 2.1183 26 1 1.0871 0.6164 2.5525 27 1 3.5504 -1.0041 3.3393 28 1 0.6122 -1.1371 4.1650 29 1 1.4829 -2.3365 3.1773 30 1 3.0115 -2.8026 5.0551 31 1 1.3234 -3.0358 5.5698 32 1 4.1817 -0.8058 5.7943 33 1 3.3109 0.3552 6.8251 34 1 3.5438 1.1799 4.4792 35 1 1.8380 0.9545 4.9393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082544670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:17 Heat of formation + Delta-G solvation = -56.767308 kcal Electronic energy + Delta-G solvation = -14664.233217 eV Core-core repulsion = 12275.740014 eV Total energy + Delta-G solvation = -2388.493203 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.41550 -36.59113 -34.09739 -32.01413 -31.09196 -29.35819 -25.93253 -25.00947 -23.55216 -22.09512 -20.15520 -19.86147 -16.75812 -16.11354 -16.00608 -15.20727 -14.90422 -14.65988 -14.14373 -13.60741 -13.29656 -12.93183 -12.56016 -12.31115 -12.18892 -11.86300 -11.36740 -11.25332 -11.16284 -10.78883 -10.50131 -10.34906 -10.17663 -10.10213 -9.59641 -9.39627 -9.11165 -8.56266 -7.41308 -6.04176 -4.01336 3.25351 3.35375 3.38134 3.85169 4.40651 4.68906 4.81452 4.94361 5.01584 5.18244 5.25867 5.30348 5.46415 5.53242 5.63588 5.73867 5.80621 5.91501 6.05948 6.06879 6.16004 6.21004 6.24565 6.40224 6.50426 6.52695 6.77200 7.11920 7.16047 7.72273 7.92734 8.34041 8.70727 9.07039 9.58720 11.09466 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.061094 B = 0.006342 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.203144 B = 4413.838938 C = 4514.232751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.182 3.818 3 H 0.033 0.967 4 C -0.498 4.498 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.902 5.902 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.297 1.297 12 N -0.672 5.672 13 C 0.064 3.936 14 C -0.088 4.088 15 C -0.153 4.153 16 C 0.062 3.938 17 O -0.388 6.388 18 C 0.062 3.938 19 C -0.151 4.151 20 H 0.045 0.955 21 H 0.053 0.947 22 H 0.025 0.975 23 H 0.263 0.737 24 H 0.329 0.671 25 H 0.066 0.934 26 H 0.018 0.982 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 1.258 16.587 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.073 3.927 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.541 5.541 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.224 1.224 12 N -0.303 5.303 13 C -0.066 4.066 14 C -0.107 4.107 15 C -0.190 4.190 16 C -0.015 4.015 17 O -0.307 6.307 18 C -0.015 4.015 19 C -0.189 4.189 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.044 0.956 23 H 0.073 0.927 24 H 0.147 0.853 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.122 1.338 16.385 16.440 hybrid contribution -1.530 0.993 -0.420 1.872 sum -1.652 2.332 15.965 16.218 Atomic orbital electron populations 1.22850 1.01586 1.00829 0.98822 1.19643 0.88507 0.95100 0.89480 0.94953 1.21000 1.31133 1.13725 0.87783 0.90073 1.24950 0.96010 0.96623 0.95891 1.69887 1.45968 1.40376 0.97822 0.86885 0.80560 0.83972 0.76837 1.20811 1.19549 1.22412 1.60646 1.57880 1.08885 1.02845 1.21962 0.98355 0.95798 0.90519 1.21227 0.99680 0.95716 0.94046 1.22257 0.99486 0.99270 0.98021 1.22580 1.00536 0.90557 0.87801 1.87890 1.60813 1.40236 1.41794 1.22555 0.91128 0.90279 0.97499 1.22218 1.02455 0.98746 0.95458 0.93679 0.92774 0.95557 0.92709 0.85286 0.91591 0.96386 0.90142 0.91515 0.90223 0.93136 0.89172 0.93237 0.89260 0.90834 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.96 8.64 37.16 0.32 -3.64 16 2 C 0.18 4.32 2.16 -68.86 -0.15 4.17 16 3 H 0.03 0.81 6.86 -51.93 -0.36 0.45 16 4 C -0.50 -14.17 9.42 -34.44 -0.32 -14.50 16 5 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 8 Si 0.89 22.15 24.37 -169.99 -4.14 18.00 16 9 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 10 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 11 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 12 N -0.67 -13.60 6.23 -107.95 -0.67 -14.27 16 13 C 0.06 1.06 4.95 -3.82 -0.02 1.04 16 14 C -0.09 -1.19 2.48 -90.43 -0.22 -1.42 16 15 C -0.15 -1.92 5.12 -26.60 -0.14 -2.05 16 16 C 0.06 0.70 6.84 37.20 0.25 0.96 16 17 O -0.39 -4.92 10.77 -35.23 -0.38 -5.29 16 18 C 0.06 0.67 6.84 37.20 0.25 0.92 16 19 C -0.15 -1.74 5.42 -26.59 -0.14 -1.88 16 20 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 21 H 0.05 1.14 8.13 -51.93 -0.42 0.71 16 22 H 0.03 0.49 7.45 -51.93 -0.39 0.11 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.33 6.24 6.82 -39.29 -0.27 5.97 16 25 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 26 H 0.02 0.30 7.44 -51.93 -0.39 -0.09 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.02 6.85 -51.93 -0.36 0.67 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 269.55 15.07 4.06 4.06 Total: -1.00 -30.60 269.55 -6.37 -36.97 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.75 Total: 2.17 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.26 Total: -14.57 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.10 Total: -41.34 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.38 Total: -5.29 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.60 -6.37 -36.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082544670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.795 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds