Wall clock time and date at job start Thu Apr 9 2020 11:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46904 * 109.47015 * 119.99841 * 2 1 3 13 13 C 1.46899 * 110.99846 * 275.00091 * 12 2 1 14 14 C 1.53003 * 109.46947 * 180.02562 * 13 12 2 15 15 C 1.53175 * 109.54399 * 294.55529 * 14 13 12 16 16 C 1.53087 * 109.16716 * 183.15455 * 15 14 13 17 17 O 1.42902 * 109.41696 * 57.60804 * 16 15 14 18 18 C 1.42909 * 114.09462 * 298.84731 * 17 16 15 19 19 C 1.53088 * 109.41871 * 61.15895 * 18 17 16 20 20 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 21 21 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.00894 * 110.99952 * 38.95386 * 12 2 1 25 25 H 1.08998 * 109.47462 * 299.99625 * 13 12 2 26 26 H 1.08996 * 109.47253 * 59.99840 * 13 12 2 27 27 H 1.08996 * 109.54688 * 54.82040 * 14 13 12 28 28 H 1.09005 * 109.52182 * 303.05983 * 15 14 13 29 29 H 1.09000 * 109.52345 * 63.24381 * 15 14 13 30 30 H 1.09002 * 109.48063 * 297.62976 * 16 15 14 31 31 H 1.08999 * 109.48542 * 177.59009 * 16 15 14 32 32 H 1.08997 * 109.47694 * 301.16833 * 18 17 16 33 33 H 1.09007 * 109.48843 * 181.14248 * 18 17 16 34 34 H 1.08994 * 109.52392 * 182.48829 * 19 18 17 35 35 H 1.08996 * 109.52757 * 62.28883 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5962 -0.5328 3.5742 15 6 1.5793 -1.6044 3.9791 16 6 2.0640 -2.3015 5.2530 17 8 2.2449 -1.3309 6.2861 18 6 3.2191 -0.3304 5.9826 19 6 2.7808 0.4459 4.7381 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.9028 -0.5285 -4.4375 24 1 1.4496 -1.4979 1.4101 25 1 2.7588 1.0462 2.1183 26 1 1.0871 0.6164 2.5525 27 1 3.5504 -1.0041 3.3393 28 1 0.6122 -1.1371 4.1650 29 1 1.4829 -2.3365 3.1773 30 1 3.0115 -2.8026 5.0551 31 1 1.3234 -3.0358 5.5698 32 1 4.1817 -0.8058 5.7943 33 1 3.3109 0.3552 6.8251 34 1 3.5438 1.1799 4.4792 35 1 1.8380 0.9545 4.9393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082544670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:17 Heat of formation + Delta-G solvation = -79.258572 kcal Electronic energy + Delta-G solvation = -14665.208511 eV Core-core repulsion = 12275.740014 eV Total energy + Delta-G solvation = -2389.468497 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39962 -38.12664 -35.54865 -33.95935 -32.00749 -30.95724 -27.30694 -26.95779 -24.49382 -23.29647 -22.00601 -20.90376 -18.81107 -17.24889 -16.90798 -16.72050 -16.57112 -15.62228 -15.60718 -15.07691 -14.61806 -14.49064 -14.29727 -13.78222 -13.53977 -13.20425 -12.88866 -12.76238 -12.35510 -12.21144 -12.02537 -11.85806 -11.50487 -11.42346 -11.23746 -11.05949 -10.76397 -10.40199 -9.03351 -8.28169 -6.30651 1.28316 1.34085 1.44264 2.31092 3.00358 3.05845 3.42773 3.80369 3.92261 4.00538 4.15148 4.33626 4.43353 4.45826 4.51127 4.56952 4.64434 4.72031 4.75049 4.82981 4.91363 4.91639 5.02176 5.03811 5.17697 5.25173 5.36115 5.46823 5.66175 6.02652 6.29325 6.68445 6.74480 6.78076 7.34580 8.89333 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.061094 B = 0.006342 C = 0.006201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.203144 B = 4413.838938 C = 4514.232751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.186 3.814 3 H 0.026 0.974 4 C -0.505 4.505 5 H 0.035 0.965 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.251 1.251 11 H -0.298 1.298 12 N -0.685 5.685 13 C 0.066 3.934 14 C -0.083 4.083 15 C -0.150 4.150 16 C 0.063 3.937 17 O -0.403 6.403 18 C 0.060 3.940 19 C -0.145 4.145 20 H 0.036 0.964 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.265 0.735 24 H 0.336 0.664 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 2.537 18.459 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.076 3.924 3 H 0.044 0.956 4 C -0.544 4.544 5 H 0.054 0.946 6 C -0.189 4.189 7 N -0.592 5.592 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.176 1.176 11 H -0.226 1.226 12 N -0.316 5.316 13 C -0.063 4.063 14 C -0.102 4.102 15 C -0.188 4.188 16 C -0.014 4.014 17 O -0.322 6.322 18 C -0.017 4.017 19 C -0.183 4.183 20 H 0.054 0.946 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.154 0.846 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.201 2.612 18.295 18.519 hybrid contribution -1.102 0.515 -0.969 1.555 sum -2.303 3.127 17.326 17.756 Atomic orbital electron populations 1.22710 0.99500 1.01410 0.99885 1.19415 0.89998 0.94067 0.88945 0.95597 1.21296 1.30292 1.12555 0.90244 0.94644 1.25825 0.97584 1.00079 0.95373 1.70048 1.47987 1.42619 0.98543 0.85797 0.79031 0.79936 0.77206 1.19276 1.17565 1.22554 1.60484 1.58095 1.09739 1.03257 1.22011 0.98782 0.95309 0.90215 1.21163 0.99269 0.96234 0.93568 1.22221 0.99127 0.98879 0.98530 1.22632 1.01223 0.90538 0.86996 1.87878 1.61369 1.40723 1.42233 1.22696 0.90945 0.90241 0.97776 1.22182 1.02871 0.98432 0.94863 0.94562 0.92578 0.92333 0.92577 0.84552 0.92275 0.95559 0.91162 0.91588 0.90860 0.92707 0.87697 0.92636 0.87263 0.89892 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.22 8.64 71.98 0.62 -6.60 16 2 C 0.19 8.63 2.16 44.17 0.10 8.73 16 3 H 0.03 1.25 6.86 -2.38 -0.02 1.23 16 4 C -0.51 -29.30 9.42 25.60 0.24 -29.06 16 5 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 6 C 0.01 0.47 5.45 84.66 0.46 0.93 16 7 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 8 Si 0.95 45.20 24.37 68.60 1.67 46.87 16 9 H -0.27 -11.98 6.87 99.48 0.68 -11.29 16 10 H -0.25 -11.08 6.53 99.48 0.65 -10.43 16 11 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 12 N -0.68 -27.20 6.23 -495.44 -3.09 -30.29 16 13 C 0.07 2.09 4.95 86.30 0.43 2.52 16 14 C -0.08 -2.13 2.48 -10.67 -0.03 -2.15 16 15 C -0.15 -3.50 5.12 30.68 0.16 -3.34 16 16 C 0.06 1.29 6.84 72.01 0.49 1.79 16 17 O -0.40 -9.20 10.77 -148.98 -1.60 -10.81 16 18 C 0.06 1.12 6.84 72.01 0.49 1.62 16 19 C -0.15 -3.00 5.42 30.69 0.17 -2.83 16 20 H 0.04 1.54 3.27 -2.39 -0.01 1.54 16 21 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 22 H 0.06 2.01 7.45 -2.39 -0.02 1.99 16 23 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 24 H 0.34 12.49 6.82 -89.70 -0.61 11.88 16 25 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 26 H 0.03 0.80 7.44 -2.39 -0.02 0.78 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.07 1.79 6.85 -2.39 -0.02 1.78 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -66.02 269.55 0.77 -65.24 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.36 Total: 17.30 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 3.13 Total: -28.41 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -2.79 Total: -90.20 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.60 Total: -10.81 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.67 Total: 46.87 kcal Total: -66.02 0.77 -65.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082544670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.017 kcal (2) G-P(sol) polarization free energy of solvation -66.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds