Wall clock time and date at job start Thu Apr 9 2020 11:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47082 * 2 1 4 4 H 1.08995 * 109.47075 * 179.24867 * 3 2 1 5 5 C 1.50709 * 109.47101 * 299.24678 * 3 2 1 6 6 H 1.07992 * 119.99868 * 119.99495 * 5 3 2 7 7 C 1.37876 * 119.99783 * 300.00525 * 5 3 2 8 8 N 1.31516 * 120.00011 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00094 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.46803 * 90.00820 * 9 7 5 11 11 H 1.48501 * 109.47155 * 210.00473 * 9 7 5 12 12 H 1.48496 * 109.47314 * 330.01021 * 9 7 5 13 13 N 1.46896 * 109.47181 * 59.24489 * 3 2 1 14 14 C 1.46900 * 111.00137 * 85.94027 * 13 3 2 15 15 C 1.52991 * 109.47488 * 175.55426 * 14 13 3 16 16 C 1.53779 * 113.61900 * 184.99900 * 15 14 13 17 17 C 1.53775 * 87.08456 * 220.01988 * 16 15 14 18 18 O 1.42902 * 113.61656 * 139.98256 * 17 16 15 19 19 C 1.53779 * 87.17322 * 25.38740 * 17 16 15 20 20 H 1.08999 * 109.47071 * 295.55710 * 1 2 3 21 21 H 1.09001 * 109.47264 * 55.56283 * 1 2 3 22 22 H 1.09001 * 109.46837 * 175.56339 * 1 2 3 23 23 H 1.09001 * 109.47132 * 240.00020 * 2 1 3 24 24 H 1.09001 * 109.47243 * 119.99866 * 2 1 3 25 25 H 0.96998 * 120.00272 * 179.97438 * 8 7 5 26 26 H 1.00900 * 111.00159 * 209.89510 * 13 3 2 27 27 H 1.09003 * 109.46593 * 55.55297 * 14 13 3 28 28 H 1.08998 * 109.46649 * 295.55947 * 14 13 3 29 29 H 1.09001 * 112.90762 * 316.25433 * 15 14 13 30 30 H 1.09003 * 113.61271 * 105.46618 * 16 15 14 31 31 H 1.08999 * 113.61042 * 334.57102 * 16 15 14 32 32 H 1.09004 * 113.61240 * 270.79842 * 17 16 15 33 33 H 0.96692 * 114.00509 * 181.53403 * 18 17 16 34 34 H 1.09003 * 113.61398 * 89.15858 * 19 17 16 35 35 H 1.08994 * 113.61862 * 220.05635 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0135 5 6 1.5530 2.1475 -1.2398 6 1 0.9309 3.0259 -1.1522 7 6 1.9015 1.6709 -2.4857 8 7 1.4769 2.2864 -3.5676 9 14 2.9779 0.1517 -2.6371 10 1 2.1203 -1.0595 -2.6877 11 1 3.7851 0.2389 -3.8805 12 1 3.8839 0.0680 -1.4635 13 7 1.5355 2.1402 1.1902 14 6 2.4169 1.9177 2.3441 15 6 1.9221 2.7462 3.5312 16 6 2.8474 2.6792 4.7577 17 6 1.5737 2.6189 5.6172 18 8 1.6672 1.7103 6.7162 19 6 0.8636 2.0279 4.3879 20 1 -0.3633 0.4433 0.9271 21 1 -0.3634 0.5811 -0.8476 22 1 -0.3633 -1.0246 -0.0795 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.7223 1.9513 -4.4442 26 1 1.4188 3.1260 1.0091 27 1 3.4328 2.2193 2.0887 28 1 2.4077 0.8606 2.6097 29 1 1.6401 3.7614 3.2519 30 1 3.4353 3.5842 4.9110 31 1 3.4478 1.7706 4.8024 32 1 1.1974 3.5993 5.9094 33 1 0.8611 1.6505 7.2468 34 1 0.9207 0.9408 4.3314 35 1 -0.1477 2.4076 4.2432 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084449318.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:37 Heat of formation + Delta-G solvation = -58.384387 kcal Electronic energy + Delta-G solvation = -14623.925951 eV Core-core repulsion = 12235.362626 eV Total energy + Delta-G solvation = -2388.563325 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32920 -38.16564 -36.06415 -34.28992 -32.86492 -29.26374 -26.90852 -26.53949 -24.95089 -22.96115 -21.17627 -20.40132 -18.70789 -18.19845 -17.31786 -16.34482 -15.85940 -15.75272 -15.27559 -14.88476 -14.70588 -14.59782 -13.97867 -13.32610 -13.17131 -13.07410 -12.79293 -12.51991 -12.36262 -12.09713 -12.02864 -11.81336 -11.56416 -11.23839 -11.12024 -10.93757 -10.71690 -10.54391 -9.06827 -8.30331 -6.32142 1.28987 1.32772 1.42313 2.30241 3.05545 3.26741 3.52520 3.74974 3.79211 4.04515 4.08724 4.32934 4.45718 4.49275 4.61485 4.70740 4.78860 4.87052 4.90008 4.92479 4.97971 5.13910 5.17592 5.31938 5.34647 5.40969 5.55936 5.64631 5.75919 6.02377 6.53634 6.67442 6.87120 6.96273 7.33562 8.85991 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052759 B = 0.006735 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.589608 B = 4156.508453 C = 4213.219622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.114 4.114 3 C 0.188 3.812 4 H -0.012 1.012 5 C -0.508 4.508 6 H 0.043 0.957 7 C 0.020 3.980 8 N -0.945 5.945 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.298 1.298 12 H -0.256 1.256 13 N -0.672 5.672 14 C 0.072 3.928 15 C -0.103 4.103 16 C -0.125 4.125 17 C 0.082 3.918 18 O -0.580 6.580 19 C -0.151 4.151 20 H 0.063 0.937 21 H 0.034 0.966 22 H 0.044 0.956 23 H 0.029 0.971 24 H 0.054 0.946 25 H 0.265 0.735 26 H 0.336 0.664 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.394 0.606 34 H 0.075 0.925 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 -1.366 17.430 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.152 4.152 3 C 0.078 3.922 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.062 0.938 7 C -0.178 4.178 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.193 1.193 11 H -0.226 1.226 12 H -0.180 1.180 13 N -0.302 5.302 14 C -0.057 4.057 15 C -0.122 4.122 16 C -0.163 4.163 17 C 0.023 3.977 18 O -0.389 6.389 19 C -0.189 4.189 20 H 0.082 0.918 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.153 0.847 27 H 0.034 0.966 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.244 0.756 34 H 0.093 0.907 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.619 -1.953 17.191 17.313 hybrid contribution 0.609 0.097 -0.895 1.087 sum 1.229 -1.856 16.296 16.447 Atomic orbital electron populations 1.21357 0.94810 0.99286 1.01859 1.21723 0.98070 0.97175 0.98274 1.19429 0.91941 0.92220 0.88582 0.99408 1.21266 1.30930 1.12139 0.90287 0.93837 1.25648 0.96982 0.99713 0.95467 1.70020 1.47568 1.42527 0.98452 0.85949 0.79475 0.80576 0.77012 1.19311 1.22611 1.18024 1.60460 1.49488 1.15878 1.04402 1.21963 0.93387 0.99527 0.90872 1.22312 0.97494 0.99724 0.92668 1.23087 0.96528 1.02908 0.93822 1.23388 0.96964 0.92905 0.84445 1.86470 1.42897 1.65465 1.44032 1.23605 0.98792 1.00468 0.96011 0.91790 0.94643 0.93736 0.95241 0.92766 0.92568 0.84669 0.96607 0.92005 0.88525 0.89837 0.90357 0.88162 0.75639 0.90673 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 9.52 71.98 0.69 -4.08 16 2 C -0.11 -4.95 5.29 30.60 0.16 -4.78 16 3 C 0.19 8.74 1.90 44.17 0.08 8.83 16 4 H -0.01 -0.56 6.77 -2.39 -0.02 -0.58 16 5 C -0.51 -28.34 7.87 25.60 0.20 -28.14 16 6 H 0.04 2.67 7.85 -2.91 -0.02 2.65 16 7 C 0.02 1.14 5.45 84.65 0.46 1.60 16 8 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 9 Si 0.94 45.56 24.38 68.60 1.67 47.23 16 10 H -0.27 -12.40 6.86 99.48 0.68 -11.72 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.26 -11.72 6.53 99.48 0.65 -11.07 16 13 N -0.67 -26.23 5.62 -495.46 -2.79 -29.02 16 14 C 0.07 2.31 5.37 86.30 0.46 2.78 16 15 C -0.10 -2.58 3.87 -10.21 -0.04 -2.62 16 16 C -0.13 -2.75 7.47 31.12 0.23 -2.52 16 17 C 0.08 1.58 5.21 31.12 0.16 1.74 16 18 O -0.58 -11.54 13.67 -148.98 -2.04 -13.57 16 19 C -0.15 -3.44 7.48 31.18 0.23 -3.21 16 20 H 0.06 2.47 7.73 -2.39 -0.02 2.45 16 21 H 0.03 1.66 7.09 -2.39 -0.02 1.65 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.03 1.34 3.26 -2.39 -0.01 1.33 16 24 H 0.05 2.08 7.62 -2.39 -0.02 2.06 16 25 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 26 H 0.34 13.32 8.10 -89.69 -0.73 12.60 16 27 H 0.02 0.53 7.94 -2.39 -0.02 0.51 16 28 H 0.06 2.02 7.33 -2.39 -0.02 2.00 16 29 H 0.10 2.32 8.08 -2.39 -0.02 2.30 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 32 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.39 4.22 9.12 -74.06 -0.68 3.54 16 34 H 0.07 1.92 7.90 -2.39 -0.02 1.90 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -64.71 275.34 -0.61 -65.32 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.41 Total: 18.78 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 2.65 Total: -30.41 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -2.49 Total: -87.35 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -2.04 Total: -13.57 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.23 kcal Total: -64.71 -0.61 -65.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084449318.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.932 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds