Wall clock time and date at job start Thu Apr 9 2020 11:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46967 * 2 1 4 4 H 1.09002 * 109.46838 * 180.75360 * 3 2 1 5 5 C 1.50696 * 109.47398 * 300.75170 * 3 2 1 6 6 H 1.08005 * 120.00042 * 120.00028 * 5 3 2 7 7 C 1.37875 * 120.00140 * 300.00167 * 5 3 2 8 8 N 1.31510 * 119.99946 * 359.72654 * 7 5 3 9 9 Si 1.86805 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46871 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47158 * 120.00006 * 9 7 5 12 12 H 1.48502 * 109.47276 * 240.00198 * 9 7 5 13 13 N 1.46904 * 109.47219 * 60.75639 * 3 2 1 14 14 C 1.46896 * 110.99930 * 85.87791 * 13 3 2 15 15 C 1.52999 * 109.47080 * 175.67704 * 14 13 3 16 16 C 1.53008 * 113.00164 * 50.32797 * 15 14 13 17 17 C 1.54032 * 113.81428 * 278.50490 * 15 14 13 18 18 O 1.44446 * 85.42498 * 223.23424 * 17 15 14 19 19 C 1.44171 * 93.38035 * 24.08658 * 18 17 15 20 20 H 1.09000 * 109.47153 * 65.16397 * 1 2 3 21 21 H 1.08996 * 109.47177 * 185.17001 * 1 2 3 22 22 H 1.08997 * 109.47012 * 305.16900 * 1 2 3 23 23 H 1.09002 * 109.46592 * 240.00118 * 2 1 3 24 24 H 1.08996 * 109.47101 * 120.00466 * 2 1 3 25 25 H 0.97001 * 119.99695 * 180.02562 * 8 7 5 26 26 H 1.00902 * 110.99765 * 209.83082 * 13 3 2 27 27 H 1.09002 * 109.46919 * 295.67234 * 14 13 3 28 28 H 1.08998 * 109.47378 * 55.67424 * 14 13 3 29 29 H 1.08997 * 109.46621 * 60.00347 * 16 15 14 30 30 H 1.08993 * 109.47189 * 180.02562 * 16 15 14 31 31 H 1.08999 * 109.46679 * 300.00661 * 16 15 14 32 32 H 1.09003 * 113.86877 * 337.34096 * 17 15 14 33 33 H 1.09006 * 113.86893 * 109.05149 * 17 15 14 34 34 H 1.08995 * 113.86804 * 221.76300 * 19 18 17 35 35 H 1.09005 * 113.86514 * 90.06233 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0135 5 6 1.5225 2.1582 -1.2210 6 1 0.9029 3.0359 -1.1104 7 6 1.8401 1.6927 -2.4793 8 7 2.5990 0.6272 -2.6141 9 14 1.1980 2.5797 -3.9928 10 1 0.3782 3.7447 -3.5733 11 1 2.3426 3.0503 -4.8136 12 1 0.3632 1.6495 -4.7948 13 7 1.5653 2.1297 1.2085 14 6 2.4744 1.8958 2.3384 15 6 2.0076 2.7116 3.5458 16 6 0.5220 2.5202 3.8584 17 6 2.4505 4.1864 3.5087 18 8 2.7627 4.0074 4.9076 19 6 2.9240 2.5807 4.7769 20 1 -0.3633 0.4316 -0.9326 21 1 -0.3633 -1.0234 0.0926 22 1 -0.3633 0.5919 0.8401 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.8226 0.2999 -3.4994 26 1 1.4452 3.1171 1.0393 27 1 2.4721 0.8360 2.5932 28 1 3.4836 2.2010 2.0620 29 1 0.3286 1.4695 4.0740 30 1 0.2521 3.1249 4.7241 31 1 -0.0728 2.8303 2.9992 32 1 3.3233 4.3692 2.8819 33 1 1.6361 4.8869 3.3235 34 1 2.4846 2.0104 5.5952 35 1 3.9418 2.2720 4.5381 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087197516.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:50 Heat of formation + Delta-G solvation = -24.740376 kcal Electronic energy + Delta-G solvation = -14922.101202 eV Core-core repulsion = 12534.996791 eV Total energy + Delta-G solvation = -2387.104411 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.44544 -36.26877 -33.32193 -31.43297 -29.92216 -26.75567 -26.44541 -25.91136 -23.59468 -22.94896 -19.04270 -18.56247 -16.65108 -15.84947 -15.69322 -15.28317 -14.74542 -14.18116 -13.55639 -13.18912 -13.12963 -12.50609 -12.23000 -11.92812 -11.70910 -11.56160 -11.32750 -10.98523 -10.87246 -10.43736 -10.35357 -10.18620 -9.92336 -9.68608 -9.45260 -9.30318 -8.77199 -8.48666 -7.25209 -6.03648 -4.09032 3.26814 3.35345 3.38724 3.85550 4.34350 4.42123 4.96321 5.23748 5.28393 5.39253 5.44587 5.59887 5.64225 5.98051 6.06161 6.07784 6.21451 6.26496 6.35502 6.41781 6.53042 6.62304 6.70735 6.85043 7.22714 7.30022 7.48917 7.72100 7.78417 7.83478 8.25090 8.37338 8.65379 9.00586 9.56028 11.02400 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041955 B = 0.007687 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.218090 B = 3641.760996 C = 3881.958258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.215 3.785 4 H -0.001 1.001 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.680 5.680 14 C 0.068 3.932 15 C -0.122 4.122 16 C -0.113 4.113 17 C 0.039 3.961 18 O -0.387 6.387 19 C 0.040 3.960 20 H 0.051 0.949 21 H 0.012 0.988 22 H 0.047 0.953 23 H 0.085 0.915 24 H 0.009 0.991 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 2.437 9.719 10.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.107 3.893 4 H 0.017 0.983 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.311 5.311 14 C -0.062 4.062 15 C -0.123 4.123 16 C -0.171 4.171 17 C -0.038 4.038 18 O -0.306 6.306 19 C -0.038 4.038 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.146 0.854 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.313 1.990 9.963 10.244 hybrid contribution 0.557 0.765 -1.343 1.643 sum -0.757 2.755 8.620 9.081 Atomic orbital electron populations 1.21437 0.97513 0.97112 1.01563 1.21413 0.95048 0.98250 0.99287 1.19140 0.93020 0.91582 0.85542 0.98316 1.21223 1.31544 1.11914 0.90340 0.92280 1.24888 0.95067 0.95019 0.98917 1.69897 1.36842 1.23130 1.22910 0.86537 0.78640 0.79749 0.83061 1.19775 1.21177 1.20999 1.60705 1.48180 1.15644 1.06529 1.21940 0.93981 0.99206 0.91051 1.23680 0.97722 0.95264 0.95607 1.21373 0.92686 1.01557 1.01444 1.24164 0.99765 0.97195 0.82649 1.89639 1.91934 1.23044 1.25962 1.24049 0.99137 0.82984 0.97614 0.93024 0.96918 0.93366 0.89705 0.97264 0.93026 0.85448 0.91569 0.96057 0.92319 0.93349 0.90574 0.90348 0.89241 0.89488 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.47 37.16 0.35 -2.28 16 2 C -0.10 -2.42 5.58 -26.73 -0.15 -2.57 16 3 C 0.21 5.20 2.30 -68.87 -0.16 5.04 16 4 H 0.00 -0.02 7.72 -51.93 -0.40 -0.42 16 5 C -0.51 -13.44 7.39 -34.44 -0.25 -13.70 16 6 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.92 11.34 55.43 0.63 -24.29 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.52 4.65 -107.96 -0.50 -14.02 16 14 C 0.07 1.17 5.01 -3.83 -0.02 1.15 16 15 C -0.12 -1.74 1.10 -153.43 -0.17 -1.91 16 16 C -0.11 -1.55 8.83 37.16 0.33 -1.23 16 17 C 0.04 0.54 8.30 37.64 0.31 0.86 16 18 O -0.39 -5.84 12.38 -35.23 -0.44 -6.28 16 19 C 0.04 0.52 8.37 37.64 0.31 0.83 16 20 H 0.05 1.23 7.39 -51.93 -0.38 0.84 16 21 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.05 1.02 7.47 -51.93 -0.39 0.63 16 23 H 0.08 2.27 6.10 -51.93 -0.32 1.95 16 24 H 0.01 0.20 7.58 -51.93 -0.39 -0.20 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.33 6.45 8.08 -39.29 -0.32 6.13 16 27 H 0.07 1.16 7.59 -51.93 -0.39 0.77 16 28 H 0.02 0.38 7.79 -51.93 -0.40 -0.02 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.08 1.12 7.63 -51.93 -0.40 0.72 16 32 H 0.08 1.08 7.99 -51.93 -0.41 0.66 16 33 H 0.09 1.16 8.10 -51.93 -0.42 0.73 16 34 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 280.79 15.07 4.23 4.23 Total: -1.00 -27.59 280.79 -6.51 -34.10 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.87 Total: 2.57 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 0.46 Total: -12.21 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.13 Total: -38.31 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.44 Total: -6.28 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.59 -6.51 -34.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087197516.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.355 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds