Wall clock time and date at job start Thu Apr 9 2020 11:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46779 * 2 1 4 4 C 1.52998 * 109.47198 * 240.00053 * 2 1 3 5 5 O 1.42909 * 109.46606 * 303.94383 * 4 2 1 6 6 N 1.46897 * 109.47167 * 119.99319 * 2 1 3 7 7 C 1.46905 * 110.99827 * 47.98532 * 6 2 1 8 8 C 1.46900 * 111.00338 * 284.02649 * 6 2 1 9 9 C 1.53006 * 109.47031 * 200.59579 * 8 6 2 10 10 C 1.50697 * 115.54693 * 39.70950 * 9 8 6 11 11 H 1.07999 * 119.99736 * 266.89055 * 10 9 8 12 12 C 1.37881 * 120.00190 * 86.89782 * 10 9 8 13 13 N 1.31516 * 119.99643 * 2.64207 * 12 10 9 14 14 Si 1.86796 * 120.00077 * 182.64320 * 12 10 9 15 15 H 1.48498 * 109.47242 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47374 * 120.00027 * 14 12 10 17 17 H 1.48501 * 109.46837 * 239.99929 * 14 12 10 18 18 C 1.52995 * 117.49681 * 253.99897 * 9 8 6 19 19 C 1.52997 * 117.49345 * 185.37497 * 9 8 6 20 20 H 1.09010 * 109.47393 * 300.00571 * 1 2 3 21 21 H 1.09004 * 109.47403 * 60.00140 * 1 2 3 22 22 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47370 * 63.94080 * 4 2 1 24 24 H 1.09000 * 109.47292 * 183.94887 * 4 2 1 25 25 H 0.96700 * 113.99579 * 180.02562 * 5 4 2 26 26 H 1.08993 * 109.47730 * 64.27029 * 7 6 2 27 27 H 1.08998 * 109.46934 * 184.28133 * 7 6 2 28 28 H 1.09010 * 109.46858 * 304.27285 * 7 6 2 29 29 H 1.08992 * 109.47166 * 320.60091 * 8 6 2 30 30 H 1.09003 * 109.46895 * 80.59881 * 8 6 2 31 31 H 0.97003 * 119.99461 * 185.01444 * 13 12 10 32 32 H 1.08997 * 117.50582 * 359.97438 * 18 9 8 33 33 H 1.09006 * 117.49469 * 145.02925 * 18 9 8 34 34 H 1.09006 * 117.49412 * 214.98024 * 19 9 8 35 35 H 1.08998 * 117.50616 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.4894 -2.0391 -1.2964 6 7 2.0196 -0.6923 1.1995 7 6 1.3296 -1.9759 1.3850 8 6 1.8818 0.1565 2.3905 9 6 2.8289 -0.3416 3.4841 10 6 4.1879 -0.7903 3.0121 11 1 4.3619 -1.8301 2.7777 12 6 5.2091 0.1265 2.8796 13 7 5.0123 1.3830 3.2145 14 14 6.8721 -0.4159 2.2243 15 1 6.8353 -1.8696 1.9230 16 1 7.1861 0.3392 0.9848 17 1 7.9173 -0.1487 3.2448 18 6 2.2104 -1.0865 4.6688 19 6 2.7446 0.3354 4.8536 20 1 -0.3634 0.5140 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.7355 -0.1683 -2.1378 24 1 3.1277 -0.7829 -1.2146 25 1 1.7708 -2.5557 -2.0639 26 1 1.5677 -2.6399 0.5540 27 1 1.6559 -2.4320 2.3196 28 1 0.2531 -1.8081 1.4190 29 1 2.1321 1.1858 2.1340 30 1 0.8543 0.1116 2.7516 31 1 5.7056 2.0421 3.0537 32 1 1.1289 -1.2214 4.6694 33 1 2.7866 -1.9014 5.1071 34 1 3.6722 0.4557 5.4134 35 1 2.0149 1.1358 4.9754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124195651.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:54 Heat of formation + Delta-G solvation = -34.770766 kcal Electronic energy + Delta-G solvation = -15300.551607 eV Core-core repulsion = 12913.012246 eV Total energy + Delta-G solvation = -2387.539361 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.86607 -38.07322 -36.20866 -33.80970 -31.67295 -28.38646 -27.42290 -27.27475 -24.72423 -22.84083 -20.92121 -20.50417 -18.45506 -17.77305 -16.61316 -16.49166 -15.87564 -15.82644 -15.09175 -14.67190 -14.43419 -14.21182 -13.66643 -13.30045 -13.01140 -12.79300 -12.78696 -12.60619 -12.33761 -12.29254 -11.94761 -11.83596 -11.61964 -11.15052 -10.82556 -10.60219 -10.21888 -9.81052 -8.72286 -7.94676 -5.99292 1.43185 1.46017 1.56725 2.53438 3.24402 3.35523 3.57637 3.60594 4.07765 4.28121 4.42930 4.44633 4.54512 4.64639 4.70266 4.72085 4.78899 4.86318 4.89538 4.99870 5.01834 5.13251 5.23248 5.31413 5.39004 5.57015 5.69484 5.74133 5.92748 6.45472 6.61630 6.70051 7.01845 7.06408 7.63926 9.14557 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.012254 C = 0.009734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.654133 B = 2284.406050 C = 2875.844549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 H 0.073 0.927 4 C 0.096 3.904 5 O -0.574 6.574 6 N -0.520 5.520 7 C 0.037 3.963 8 C 0.118 3.882 9 C 0.026 3.974 10 C -0.454 4.454 11 H 0.042 0.958 12 C 0.023 3.977 13 N -0.917 5.917 14 Si 0.941 3.059 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.289 1.289 18 C -0.195 4.195 19 C -0.159 4.159 20 H 0.039 0.961 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.387 0.613 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.021 0.979 29 H 0.039 0.961 30 H 0.011 0.989 31 H 0.253 0.747 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 -3.499 -8.302 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.039 4.039 3 H 0.091 0.909 4 C 0.018 3.982 5 O -0.382 6.382 6 N -0.243 5.243 7 C -0.110 4.110 8 C -0.010 4.010 9 C 0.026 3.974 10 C -0.492 4.492 11 H 0.060 0.940 12 C -0.174 4.174 13 N -0.558 5.558 14 Si 0.769 3.231 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.216 1.216 18 C -0.232 4.232 19 C -0.197 4.197 20 H 0.058 0.942 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.055 0.945 25 H 0.237 0.763 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.150 -3.253 -7.758 11.040 hybrid contribution 0.547 0.171 -0.409 0.704 sum -6.603 -3.082 -8.166 10.945 Atomic orbital electron populations 1.22257 0.96419 1.02445 1.01497 1.21938 0.93958 0.97048 0.90983 0.90868 1.22058 0.96477 0.83634 0.96006 1.86492 1.73975 1.26759 1.50932 1.61903 1.56282 1.04138 1.01931 1.22464 0.94852 0.91933 1.01793 1.21378 0.93918 0.94902 0.90823 1.19029 0.94444 0.98178 0.85799 1.20362 0.93309 0.93438 1.42126 0.93992 1.25463 1.00802 0.95283 0.95878 1.70120 1.34838 1.02107 1.48701 0.85774 0.81196 0.78349 0.77821 1.19685 1.20950 1.21564 1.23042 0.98336 0.94722 1.07129 1.22354 0.99758 0.93556 1.04055 0.94185 0.91028 0.91506 0.91321 0.94485 0.76315 0.89245 0.94099 0.96053 0.94223 0.97052 0.93790 0.89868 0.90954 0.92329 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.82 8.15 71.98 0.59 -4.23 16 2 C 0.07 2.35 2.86 44.91 0.13 2.48 16 3 H 0.07 2.61 7.67 -2.38 -0.02 2.59 16 4 C 0.10 2.69 6.85 71.98 0.49 3.18 16 5 O -0.57 -14.65 9.70 -148.98 -1.44 -16.09 16 6 N -0.52 -21.38 3.91 -897.04 -3.51 -24.89 16 7 C 0.04 1.39 8.33 127.69 1.06 2.45 16 8 C 0.12 5.35 4.59 86.31 0.40 5.75 16 9 C 0.03 1.32 1.19 -52.93 -0.06 1.25 16 10 C -0.45 -25.23 8.17 25.60 0.21 -25.02 16 11 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 12 C 0.02 1.31 5.42 84.66 0.46 1.77 16 13 N -0.92 -53.47 12.59 21.45 0.27 -53.20 16 14 Si 0.94 45.03 29.54 68.60 2.03 47.05 16 15 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 16 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 18 C -0.20 -8.68 9.41 30.59 0.29 -8.39 16 19 C -0.16 -7.78 9.11 30.60 0.28 -7.50 16 20 H 0.04 1.20 7.45 -2.38 -0.02 1.18 16 21 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 22 H 0.07 1.95 5.68 -2.39 -0.01 1.94 16 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.39 6.16 9.12 -74.06 -0.68 5.48 16 26 H 0.09 3.19 5.47 -2.39 -0.01 3.17 16 27 H 0.04 1.65 7.09 -2.39 -0.02 1.63 16 28 H 0.02 0.73 5.92 -2.38 -0.01 0.72 16 29 H 0.04 1.95 7.63 -2.39 -0.02 1.93 16 30 H 0.01 0.49 7.41 -2.39 -0.02 0.47 16 31 H 0.25 14.20 8.32 -92.71 -0.77 13.43 16 32 H 0.08 3.28 8.08 -2.39 -0.02 3.26 16 33 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 34 H 0.06 3.13 8.13 -2.38 -0.02 3.11 16 35 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -62.71 277.63 1.57 -61.14 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.39 Total: 14.25 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 3.84 Total: -28.26 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -3.24 Total: -78.09 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -1.44 Total: -16.09 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -62.71 1.57 -61.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124195651.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.367 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds