Wall clock time and date at job start Thu Apr 9 2020 11:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46898 * 111.00513 * 2 1 4 4 C 1.53006 * 109.47006 * 293.95181 * 3 2 1 5 5 C 1.50698 * 109.47184 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99944 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.46866 * 90.00390 * 9 7 5 11 11 H 1.48502 * 109.47245 * 210.00175 * 9 7 5 12 12 H 1.48494 * 109.47271 * 330.00312 * 9 7 5 13 13 C 1.46900 * 111.00120 * 123.95606 * 2 1 3 14 14 C 1.53005 * 109.47358 * 66.04028 * 13 2 1 15 15 O 1.42902 * 112.84785 * 53.80583 * 14 13 2 16 16 C 1.53780 * 113.61324 * 282.50477 * 14 13 2 17 17 C 1.53783 * 87.07917 * 220.01820 * 16 14 13 18 18 C 1.53776 * 87.08248 * 25.43214 * 17 16 14 19 19 H 1.09008 * 109.47294 * 59.99701 * 1 2 3 20 20 H 1.08994 * 109.47718 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47181 * 300.00759 * 1 2 3 22 22 H 1.09001 * 109.47062 * 173.95435 * 3 2 1 23 23 H 1.08993 * 109.47084 * 53.94882 * 3 2 1 24 24 H 1.09001 * 109.46801 * 300.00064 * 4 3 2 25 25 H 1.09001 * 109.46998 * 59.99660 * 4 3 2 26 26 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47821 * 186.04187 * 13 2 1 28 28 H 1.09003 * 109.46887 * 306.04174 * 13 2 1 29 29 H 0.96701 * 113.99714 * 309.66788 * 15 14 13 30 30 H 1.09005 * 113.61782 * 334.56032 * 16 14 13 31 31 H 1.09003 * 113.61915 * 105.46853 * 16 14 13 32 32 H 1.08998 * 113.61165 * 270.88075 * 17 16 14 33 33 H 1.09002 * 113.61526 * 139.98360 * 17 16 14 34 34 H 1.09002 * 113.61323 * 220.02323 * 18 17 16 35 35 H 1.08998 * 113.61904 * 89.11589 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1712 3.4644 -1.3181 6 1 2.7193 3.8325 -0.4633 7 6 1.9661 4.2816 -2.4095 8 7 1.2991 3.8333 -3.4506 9 14 2.6356 6.0255 -2.4095 10 1 4.0078 6.0289 -2.9776 11 1 1.7565 6.8932 -3.2338 12 1 2.6749 6.5406 -1.0174 13 6 1.9954 -0.7660 1.1375 14 6 1.6313 -2.2427 0.9704 15 8 2.0449 -2.7770 -0.2888 16 6 0.1695 -2.5608 1.3264 17 6 0.6925 -3.8485 1.9847 18 6 2.0315 -3.1156 2.1715 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8900 22 1 3.0798 1.3442 0.1082 23 1 1.5611 1.9273 0.8308 24 1 2.0659 1.5014 -2.1492 25 1 0.5473 2.0844 -1.4266 26 1 1.1545 4.4083 -4.2182 27 1 3.0796 -0.6613 1.1756 28 1 1.5611 -0.3872 2.0628 29 1 1.7757 -2.2443 -1.0496 30 1 -0.2710 -1.8572 2.0329 31 1 -0.4626 -2.7407 0.4568 32 1 0.7501 -4.6958 1.3015 33 1 0.1940 -4.0929 2.9227 34 1 2.9026 -3.7434 1.9839 35 1 2.1002 -2.5636 3.1088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388613178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:08 Heat of formation + Delta-G solvation = -30.480219 kcal Electronic energy + Delta-G solvation = -14619.709685 eV Core-core repulsion = 12232.356376 eV Total energy + Delta-G solvation = -2387.353309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.83778 -36.47961 -34.32958 -33.00545 -29.96916 -28.00174 -26.14450 -25.27517 -23.72900 -21.44874 -19.96359 -19.46181 -16.55349 -16.35363 -15.67742 -15.08552 -14.67133 -14.49516 -14.26020 -13.47271 -12.95350 -12.81227 -12.35844 -12.10567 -12.08170 -11.36558 -11.33867 -11.12227 -10.98578 -10.89149 -10.77920 -10.60139 -10.06085 -9.86994 -9.59648 -9.21846 -9.11412 -8.33862 -7.81478 -6.00361 -4.02782 3.31839 3.37959 3.40960 4.20508 4.28161 4.49342 4.58497 4.77305 4.91779 5.06060 5.35678 5.49951 5.59247 5.64782 5.69058 5.76646 5.85063 5.87186 5.92458 6.08559 6.21498 6.30562 6.35605 6.44321 6.50848 6.94518 7.43824 7.51759 7.76257 7.87749 7.97014 8.06389 8.42582 9.04338 9.60972 11.11057 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.073002 B = 0.005649 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.457131 B = 4955.133095 C = 5030.129342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.542 5.542 3 C 0.063 3.937 4 C 0.028 3.972 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.034 3.966 14 C 0.120 3.880 15 O -0.543 6.543 16 C -0.167 4.167 17 C -0.136 4.136 18 C -0.129 4.129 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.018 0.982 22 H 0.060 0.940 23 H 0.020 0.980 24 H 0.025 0.975 25 H 0.017 0.983 26 H 0.260 0.740 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.391 0.609 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 -11.864 9.815 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.267 5.267 3 C -0.063 4.063 4 C -0.009 4.009 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.095 4.095 14 C 0.078 3.922 15 O -0.351 6.351 16 C -0.204 4.204 17 C -0.173 4.173 18 C -0.167 4.167 19 H 0.096 0.904 20 H 0.086 0.914 21 H 0.036 0.964 22 H 0.079 0.921 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.241 0.759 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.329 -12.487 9.583 15.796 hybrid contribution -0.194 1.948 0.337 1.987 sum -1.523 -10.538 9.919 14.552 Atomic orbital electron populations 1.22706 0.88173 1.01506 1.01294 1.62013 1.07612 1.16345 1.40699 1.22357 0.98525 0.84962 1.00475 1.19095 0.96908 0.94054 0.90874 1.21191 1.35183 0.97830 1.01951 0.92847 1.24986 0.95258 0.98472 0.95547 1.69970 1.40784 1.36475 1.06023 0.86596 0.78890 0.84560 0.77953 1.20607 1.21214 1.19957 1.22673 1.00792 0.93112 0.92879 1.22071 0.93381 0.91339 0.85453 1.86294 1.80531 1.53011 1.15236 1.23744 0.97758 0.97863 1.01057 1.22769 0.96665 0.97363 1.00531 1.23005 0.98498 0.98441 0.96741 0.90443 0.91398 0.96378 0.92145 0.96208 0.95708 0.96462 0.92986 0.90490 0.94543 0.75903 0.89805 0.90721 0.89976 0.91774 0.90706 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.70 60.06 0.52 0.71 16 2 N -0.54 -9.59 4.05 -242.92 -0.98 -10.58 16 3 C 0.06 1.34 4.90 -3.82 -0.02 1.32 16 4 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 5 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 6 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 13 C 0.03 0.51 4.70 -3.82 -0.02 0.49 16 14 C 0.12 1.59 1.29 -89.81 -0.12 1.48 16 15 O -0.54 -8.15 13.41 -35.23 -0.47 -8.62 16 16 C -0.17 -1.94 5.12 -25.92 -0.13 -2.08 16 17 C -0.14 -1.43 8.02 -25.92 -0.21 -1.64 16 18 C -0.13 -1.46 7.47 -25.92 -0.19 -1.65 16 19 H 0.08 1.42 6.47 -51.92 -0.34 1.08 16 20 H 0.07 0.94 4.42 -51.93 -0.23 0.71 16 21 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 22 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 23 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 24 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.47 6.55 -51.93 -0.34 0.13 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 28 H 0.04 0.52 8.03 -51.93 -0.42 0.10 16 29 H 0.39 5.66 8.38 45.56 0.38 6.04 16 30 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 31 H 0.07 0.88 7.15 -51.93 -0.37 0.51 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -29.95 279.05 -7.29 -37.25 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.04 Total: 1.57 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.71 Total: -14.35 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.25 Total: -36.73 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.47 Total: -8.62 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.95 -7.29 -37.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388613178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.768 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds