Wall clock time and date at job start Thu Apr 9 2020 11:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46898 * 111.00513 * 2 1 4 4 C 1.53006 * 109.47006 * 293.95181 * 3 2 1 5 5 C 1.50698 * 109.47184 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99819 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99944 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 180.02562 * 7 5 4 10 10 H 1.48510 * 109.46866 * 90.00390 * 9 7 5 11 11 H 1.48502 * 109.47245 * 210.00175 * 9 7 5 12 12 H 1.48494 * 109.47271 * 330.00312 * 9 7 5 13 13 C 1.46900 * 111.00120 * 123.95606 * 2 1 3 14 14 C 1.53005 * 109.47358 * 66.04028 * 13 2 1 15 15 O 1.42902 * 112.84785 * 53.80583 * 14 13 2 16 16 C 1.53780 * 113.61324 * 282.50477 * 14 13 2 17 17 C 1.53783 * 87.07917 * 220.01820 * 16 14 13 18 18 C 1.53776 * 87.08248 * 25.43214 * 17 16 14 19 19 H 1.09008 * 109.47294 * 59.99701 * 1 2 3 20 20 H 1.08994 * 109.47718 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47181 * 300.00759 * 1 2 3 22 22 H 1.09001 * 109.47062 * 173.95435 * 3 2 1 23 23 H 1.08993 * 109.47084 * 53.94882 * 3 2 1 24 24 H 1.09001 * 109.46801 * 300.00064 * 4 3 2 25 25 H 1.09001 * 109.46998 * 59.99660 * 4 3 2 26 26 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47821 * 186.04187 * 13 2 1 28 28 H 1.09003 * 109.46887 * 306.04174 * 13 2 1 29 29 H 0.96701 * 113.99714 * 309.66788 * 15 14 13 30 30 H 1.09005 * 113.61782 * 334.56032 * 16 14 13 31 31 H 1.09003 * 113.61915 * 105.46853 * 16 14 13 32 32 H 1.08998 * 113.61165 * 270.88075 * 17 16 14 33 33 H 1.09002 * 113.61526 * 139.98360 * 17 16 14 34 34 H 1.09002 * 113.61323 * 220.02323 * 18 17 16 35 35 H 1.08998 * 113.61904 * 89.11589 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1712 3.4644 -1.3181 6 1 2.7193 3.8325 -0.4633 7 6 1.9661 4.2816 -2.4095 8 7 1.2991 3.8333 -3.4506 9 14 2.6356 6.0255 -2.4095 10 1 4.0078 6.0289 -2.9776 11 1 1.7565 6.8932 -3.2338 12 1 2.6749 6.5406 -1.0174 13 6 1.9954 -0.7660 1.1375 14 6 1.6313 -2.2427 0.9704 15 8 2.0449 -2.7770 -0.2888 16 6 0.1695 -2.5608 1.3264 17 6 0.6925 -3.8485 1.9847 18 6 2.0315 -3.1156 2.1715 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5140 0.8900 22 1 3.0798 1.3442 0.1082 23 1 1.5611 1.9273 0.8308 24 1 2.0659 1.5014 -2.1492 25 1 0.5473 2.0844 -1.4266 26 1 1.1545 4.4083 -4.2182 27 1 3.0796 -0.6613 1.1756 28 1 1.5611 -0.3872 2.0628 29 1 1.7757 -2.2443 -1.0496 30 1 -0.2710 -1.8572 2.0329 31 1 -0.4626 -2.7407 0.4568 32 1 0.7501 -4.6958 1.3015 33 1 0.1940 -4.0929 2.9227 34 1 2.9026 -3.7434 1.9839 35 1 2.1002 -2.5636 3.1088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388613178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:08 Heat of formation + Delta-G solvation = -51.680530 kcal Electronic energy + Delta-G solvation = -14620.628999 eV Core-core repulsion = 12232.356376 eV Total energy + Delta-G solvation = -2388.272624 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.90041 -37.93662 -35.41324 -35.09717 -31.85257 -29.26090 -27.69633 -26.36082 -25.36288 -22.86172 -21.56891 -20.48768 -18.60138 -17.55267 -16.92453 -16.55531 -16.18668 -16.00348 -15.53379 -14.86247 -14.44538 -14.17271 -13.97107 -13.52581 -13.23483 -13.12674 -12.81773 -12.65741 -12.49008 -12.32344 -11.98077 -11.84215 -11.72550 -11.54281 -11.28697 -10.84945 -10.54521 -10.47360 -9.24848 -8.20457 -6.31715 1.40200 1.41648 1.52474 2.39927 2.99248 3.13169 3.21179 3.62286 3.85084 3.88356 4.02597 4.28569 4.41776 4.49508 4.53028 4.67949 4.73589 4.78831 4.81119 4.86396 5.02590 5.04921 5.08303 5.14965 5.33580 5.45235 5.47495 5.65382 5.77280 6.07016 6.22885 6.31455 6.83992 6.85425 7.37465 8.91635 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.073002 B = 0.005649 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.457131 B = 4955.133095 C = 5030.129342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.550 5.550 3 C 0.080 3.920 4 C 0.036 3.964 5 C -0.546 4.546 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.263 1.263 13 C 0.037 3.963 14 C 0.107 3.893 15 O -0.556 6.556 16 C -0.165 4.165 17 C -0.128 4.128 18 C -0.125 4.125 19 H 0.049 0.951 20 H 0.095 0.905 21 H 0.024 0.976 22 H 0.060 0.940 23 H 0.021 0.979 24 H -0.007 1.007 25 H -0.004 1.004 26 H 0.264 0.736 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.389 0.611 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 -11.932 11.447 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.275 5.275 3 C -0.048 4.048 4 C -0.001 4.001 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.188 1.188 13 C -0.091 4.091 14 C 0.065 3.935 15 O -0.364 6.364 16 C -0.202 4.202 17 C -0.165 4.165 18 C -0.163 4.163 19 H 0.068 0.932 20 H 0.113 0.887 21 H 0.043 0.957 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.011 0.989 25 H 0.015 0.985 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.239 0.761 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.202 -12.574 11.235 16.905 hybrid contribution -0.248 1.915 -0.176 1.939 sum -1.450 -10.659 11.059 15.428 Atomic orbital electron populations 1.22678 0.87317 1.02925 1.00204 1.61891 1.08430 1.14381 1.42766 1.21984 0.98554 0.86699 0.97544 1.18919 0.95138 0.93606 0.92443 1.21631 1.35410 0.99083 1.02346 0.92326 1.25942 0.95367 1.03209 0.95021 1.70104 1.41942 1.38302 1.06764 0.85443 0.78297 0.78780 0.78487 1.19775 1.20667 1.18770 1.22731 1.00394 0.93830 0.92154 1.22330 0.95156 0.90425 0.85576 1.86291 1.80930 1.53279 1.15891 1.23741 0.96423 0.98792 1.01290 1.22722 0.96024 0.96493 1.01253 1.23076 0.98826 0.98050 0.96310 0.93204 0.88710 0.95721 0.92170 0.96118 0.98864 0.98533 0.92742 0.91102 0.93154 0.76093 0.88818 0.91008 0.90490 0.89632 0.91070 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.70 127.69 1.11 1.64 16 2 N -0.55 -19.30 4.05 -922.46 -3.74 -23.04 16 3 C 0.08 3.38 4.90 86.31 0.42 3.80 16 4 C 0.04 1.95 4.90 29.85 0.15 2.09 16 5 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 7 C 0.00 0.15 5.46 84.65 0.46 0.62 16 8 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 9 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 13 C 0.04 1.05 4.70 86.30 0.41 1.46 16 14 C 0.11 2.66 1.29 -10.27 -0.01 2.65 16 15 O -0.56 -16.27 13.41 -148.98 -2.00 -18.26 16 16 C -0.16 -3.43 5.12 31.12 0.16 -3.27 16 17 C -0.13 -2.32 8.02 31.12 0.25 -2.07 16 18 C -0.12 -2.49 7.47 31.12 0.23 -2.26 16 19 H 0.05 1.87 6.47 -2.38 -0.02 1.86 16 20 H 0.09 2.52 4.42 -2.39 -0.01 2.51 16 21 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 22 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 23 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 24 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 25 H 0.00 -0.21 6.55 -2.39 -0.02 -0.22 16 26 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.07 2.09 7.93 -2.39 -0.02 2.07 16 28 H 0.05 1.31 8.03 -2.39 -0.02 1.29 16 29 H 0.39 11.28 8.38 -74.06 -0.62 10.65 16 30 H 0.09 1.79 7.92 -2.38 -0.02 1.77 16 31 H 0.07 1.54 7.15 -2.39 -0.02 1.53 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -64.17 279.05 0.42 -63.75 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.44 Total: 14.40 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.41 Total: -26.50 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.45 Total: -79.80 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -2.00 Total: -18.26 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -64.17 0.42 -63.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388613178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.065 kcal (2) G-P(sol) polarization free energy of solvation -64.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds