Wall clock time and date at job start Thu Apr 9 2020 11:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47145 * 2 1 4 4 C 1.42900 * 114.00265 * 179.97438 * 3 2 1 5 5 C 1.53783 * 113.61505 * 150.00194 * 4 3 2 6 6 C 1.53790 * 87.07872 * 89.20479 * 5 4 3 7 7 C 1.52995 * 113.61366 * 139.98340 * 6 5 4 8 8 N 1.46499 * 109.46915 * 174.99913 * 7 6 5 9 9 C 1.46508 * 119.99913 * 269.99612 * 8 7 6 10 10 C 1.36939 * 120.00318 * 90.00016 * 8 7 6 11 11 H 1.07998 * 119.99501 * 22.38191 * 10 8 7 12 12 C 1.38806 * 120.00143 * 202.38156 * 10 8 7 13 13 N 1.31620 * 119.99924 * 11.33063 * 12 10 8 14 14 Si 1.86801 * 120.00108 * 191.33011 * 12 10 8 15 15 H 1.48504 * 109.47032 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47015 * 120.00193 * 14 12 10 17 17 H 1.48504 * 109.47111 * 240.00122 * 14 12 10 18 18 C 1.53779 * 87.08178 * 25.42893 * 6 5 4 19 19 H 1.08995 * 109.47048 * 59.99770 * 1 2 3 20 20 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46768 * 299.99515 * 1 2 3 22 22 H 1.09002 * 109.46768 * 240.00485 * 2 1 3 23 23 H 1.08999 * 109.47503 * 120.00812 * 2 1 3 24 24 H 1.09005 * 112.84694 * 18.80835 * 4 3 2 25 25 H 1.08990 * 113.61588 * 334.65634 * 5 4 3 26 26 H 1.08995 * 113.61463 * 203.74567 * 5 4 3 27 27 H 1.09004 * 113.60833 * 270.80031 * 6 5 4 28 28 H 1.08995 * 109.46993 * 294.99544 * 7 6 5 29 29 H 1.09001 * 109.47261 * 54.99634 * 7 6 5 30 30 H 1.08998 * 109.46750 * 94.19780 * 9 8 7 31 31 H 1.09001 * 109.46895 * 214.20169 * 9 8 7 32 32 H 1.09005 * 109.46969 * 334.20189 * 9 8 7 33 33 H 0.97007 * 119.99914 * 180.02562 * 13 12 10 34 34 H 1.09008 * 113.60997 * 89.11864 * 18 6 5 35 35 H 1.08996 * 113.61582 * 220.01878 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9489 2.7252 -0.7039 6 6 3.8412 3.4322 0.6576 7 6 5.0040 4.3832 0.9480 8 7 4.7519 5.0933 2.2044 9 6 4.0323 6.3694 2.1929 10 6 5.1889 4.5644 3.3895 11 1 6.0011 3.8526 3.3962 12 6 4.5879 4.9430 4.5820 13 7 3.4649 5.6292 4.5642 14 14 5.3730 4.4786 6.2122 15 1 6.6210 3.7141 5.9606 16 1 5.6934 5.7110 6.9762 17 1 4.4288 3.6419 6.9958 18 6 4.0038 2.0454 1.3021 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.9281 0.5456 -0.3229 25 1 3.2640 3.1180 -1.4552 26 1 4.9719 2.6339 -1.0686 27 1 2.8671 3.8872 0.8374 28 1 5.9282 3.8117 1.0328 29 1 5.0956 5.1038 0.1353 30 1 2.9718 6.1901 2.3692 31 1 4.4269 7.0160 2.9767 32 1 4.1631 6.8516 1.2240 33 1 3.0451 5.8941 5.3976 34 1 5.0419 1.7683 1.4857 35 1 3.3632 1.8895 2.1701 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388713037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:11 Heat of formation + Delta-G solvation = -7.363832 kcal Electronic energy + Delta-G solvation = -14681.790768 eV Core-core repulsion = 12295.439860 eV Total energy + Delta-G solvation = -2386.350907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.13353 -36.36632 -34.66736 -31.23252 -30.57137 -26.99565 -25.76608 -25.03931 -22.82009 -22.71392 -20.48631 -18.88221 -16.58749 -16.22410 -15.43881 -14.89674 -14.78651 -13.91255 -13.51726 -13.21183 -12.94565 -12.60166 -12.33402 -11.83341 -11.73593 -11.43440 -11.25299 -10.92936 -10.79879 -10.59594 -10.31626 -10.19815 -10.03852 -9.84426 -9.55973 -9.35629 -9.04481 -8.43291 -6.60752 -5.60659 -3.04956 3.43014 3.49758 3.51771 3.83061 4.58943 5.01383 5.10442 5.20592 5.30483 5.38323 5.44785 5.49890 5.56828 5.61950 5.87424 5.94923 6.01372 6.13501 6.19906 6.29433 6.48556 6.55894 6.74485 6.82272 6.89348 6.94667 7.27721 7.50247 7.59888 7.85280 7.91618 8.52275 9.36329 10.00661 10.50216 11.44866 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.007867 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.605850 B = 3558.534881 C = 3923.366980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.366 6.366 4 C 0.059 3.941 5 C -0.141 4.141 6 C -0.110 4.110 7 C 0.159 3.841 8 N -0.603 5.603 9 C 0.165 3.835 10 C -0.242 4.242 11 H 0.066 0.934 12 C -0.002 4.002 13 N -0.910 5.910 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.291 1.291 17 H -0.292 1.292 18 C -0.136 4.136 19 H 0.061 0.939 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.027 0.973 31 H 0.043 0.957 32 H -0.005 1.005 33 H 0.249 0.751 34 H 0.080 0.920 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 -8.868 -9.660 13.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.285 6.285 4 C 0.001 3.999 5 C -0.180 4.180 6 C -0.131 4.131 7 C 0.032 3.968 8 N -0.325 5.325 9 C 0.020 3.980 10 C -0.372 4.372 11 H 0.084 0.916 12 C -0.200 4.200 13 N -0.556 5.556 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.219 1.219 18 C -0.174 4.174 19 H 0.080 0.920 20 H 0.085 0.915 21 H 0.083 0.917 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.013 0.987 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.723 -8.617 -9.510 12.948 hybrid contribution 0.362 -0.556 1.053 1.245 sum -1.360 -9.172 -8.456 12.549 Atomic orbital electron populations 1.21738 0.94068 1.01816 1.03208 1.22453 0.95354 0.84492 0.99600 1.87910 1.20428 1.25476 1.94670 1.23174 0.80919 0.97146 0.98681 1.23270 1.00264 0.96065 0.98363 1.23117 1.01999 0.95532 0.92485 1.20854 0.94481 0.93020 0.88434 1.43957 1.66510 1.20199 1.01872 1.20773 0.96405 0.86111 0.94695 1.19203 1.11183 1.22901 0.83926 0.91590 1.24999 0.96093 1.00938 0.97966 1.70083 1.17457 1.42880 1.25174 0.86238 0.78525 0.77651 0.84489 1.20457 1.21765 1.21895 1.23277 1.00473 0.97039 0.96570 0.92034 0.91457 0.91683 0.93899 0.93561 0.92110 0.91625 0.89688 0.89596 0.93987 0.94611 0.95508 0.93864 0.98684 0.94016 0.90103 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 37.16 0.38 -1.31 16 2 C 0.06 0.75 6.50 37.16 0.24 0.99 16 3 O -0.37 -6.17 10.28 -35.23 -0.36 -6.54 16 4 C 0.06 0.94 4.37 -25.92 -0.11 0.82 16 5 C -0.14 -2.23 7.47 -25.91 -0.19 -2.42 16 6 C -0.11 -2.19 3.90 -89.81 -0.35 -2.54 16 7 C 0.16 3.40 5.55 -4.04 -0.02 3.37 16 8 N -0.60 -15.72 2.93 -181.12 -0.53 -16.25 16 9 C 0.16 4.27 9.01 59.85 0.54 4.80 16 10 C -0.24 -6.81 9.67 -15.06 -0.15 -6.95 16 11 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 12 C 0.00 -0.07 5.13 -17.43 -0.09 -0.16 16 13 N -0.91 -27.37 10.59 55.49 0.59 -26.79 16 14 Si 0.90 22.42 29.57 -169.99 -5.03 17.40 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 18 C -0.14 -2.56 7.47 -25.92 -0.19 -2.76 16 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 27 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 28 H 0.04 0.86 7.73 -51.93 -0.40 0.46 16 29 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 30 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 31 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 32 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.08 1.45 7.90 -51.92 -0.41 1.04 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 287.23 15.07 4.33 4.33 Total: -1.00 -30.89 287.23 -7.09 -37.99 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -6.14 Total: -4.00 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 0.05 Total: -6.14 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.06 Total: -43.04 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.36 Total: -6.54 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.89 -7.09 -37.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388713037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.621 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds