Wall clock time and date at job start Thu Apr 9 2020 11:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.47145 * 2 1 4 4 C 1.42900 * 114.00265 * 179.97438 * 3 2 1 5 5 C 1.53783 * 113.61505 * 150.00194 * 4 3 2 6 6 C 1.53790 * 87.07872 * 89.20479 * 5 4 3 7 7 C 1.52995 * 113.61366 * 139.98340 * 6 5 4 8 8 N 1.46499 * 109.46915 * 174.99913 * 7 6 5 9 9 C 1.46508 * 119.99913 * 269.99612 * 8 7 6 10 10 C 1.36939 * 120.00318 * 90.00016 * 8 7 6 11 11 H 1.07998 * 119.99501 * 22.38191 * 10 8 7 12 12 C 1.38806 * 120.00143 * 202.38156 * 10 8 7 13 13 N 1.31620 * 119.99924 * 11.33063 * 12 10 8 14 14 Si 1.86801 * 120.00108 * 191.33011 * 12 10 8 15 15 H 1.48504 * 109.47032 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47015 * 120.00193 * 14 12 10 17 17 H 1.48504 * 109.47111 * 240.00122 * 14 12 10 18 18 C 1.53779 * 87.08178 * 25.42893 * 6 5 4 19 19 H 1.08995 * 109.47048 * 59.99770 * 1 2 3 20 20 H 1.09003 * 109.46779 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46768 * 299.99515 * 1 2 3 22 22 H 1.09002 * 109.46768 * 240.00485 * 2 1 3 23 23 H 1.08999 * 109.47503 * 120.00812 * 2 1 3 24 24 H 1.09005 * 112.84694 * 18.80835 * 4 3 2 25 25 H 1.08990 * 113.61588 * 334.65634 * 5 4 3 26 26 H 1.08995 * 113.61463 * 203.74567 * 5 4 3 27 27 H 1.09004 * 113.60833 * 270.80031 * 6 5 4 28 28 H 1.08995 * 109.46993 * 294.99544 * 7 6 5 29 29 H 1.09001 * 109.47261 * 54.99634 * 7 6 5 30 30 H 1.08998 * 109.46750 * 94.19780 * 9 8 7 31 31 H 1.09001 * 109.46895 * 214.20169 * 9 8 7 32 32 H 1.09005 * 109.46969 * 334.20189 * 9 8 7 33 33 H 0.97007 * 119.99914 * 180.02562 * 13 12 10 34 34 H 1.09008 * 113.60997 * 89.11864 * 18 6 5 35 35 H 1.08996 * 113.61582 * 220.01878 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9489 2.7252 -0.7039 6 6 3.8412 3.4322 0.6576 7 6 5.0040 4.3832 0.9480 8 7 4.7519 5.0933 2.2044 9 6 4.0323 6.3694 2.1929 10 6 5.1889 4.5644 3.3895 11 1 6.0011 3.8526 3.3962 12 6 4.5879 4.9430 4.5820 13 7 3.4649 5.6292 4.5642 14 14 5.3730 4.4786 6.2122 15 1 6.6210 3.7141 5.9606 16 1 5.6934 5.7110 6.9762 17 1 4.4288 3.6419 6.9958 18 6 4.0038 2.0454 1.3021 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.9281 0.5456 -0.3229 25 1 3.2640 3.1180 -1.4552 26 1 4.9719 2.6339 -1.0686 27 1 2.8671 3.8872 0.8374 28 1 5.9282 3.8117 1.0328 29 1 5.0956 5.1038 0.1353 30 1 2.9718 6.1901 2.3692 31 1 4.4269 7.0160 2.9767 32 1 4.1631 6.8516 1.2240 33 1 3.0451 5.8941 5.3976 34 1 5.0419 1.7683 1.4857 35 1 3.3632 1.8895 2.1701 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388713037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:10 Heat of formation + Delta-G solvation = -26.184882 kcal Electronic energy + Delta-G solvation = -14682.606910 eV Core-core repulsion = 12295.439860 eV Total energy + Delta-G solvation = -2387.167049 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49080 -37.86753 -36.44219 -33.15965 -31.76374 -28.74519 -27.88259 -26.46019 -24.54434 -23.71309 -22.29068 -20.30497 -18.69893 -17.49761 -16.82328 -16.53669 -16.22308 -15.66274 -15.22715 -14.94318 -14.46329 -13.96763 -13.70726 -13.33040 -13.12706 -12.99149 -12.81365 -12.66999 -12.36685 -12.27477 -12.10716 -12.01400 -11.80030 -11.63957 -11.17562 -10.86968 -10.58525 -10.31585 -8.71750 -7.78502 -5.24955 1.45048 1.45605 1.56185 2.53010 2.72408 3.35651 3.63231 3.81605 3.94630 4.07511 4.17895 4.20776 4.37769 4.46314 4.49379 4.79086 4.81750 4.89728 4.90640 4.93045 5.01576 5.02541 5.11622 5.24640 5.30089 5.35544 5.47897 5.61561 5.68620 5.75551 6.37678 6.43958 7.19548 7.93134 8.37458 9.26219 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031083 B = 0.007867 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.605850 B = 3558.534881 C = 3923.366980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.397 6.397 4 C 0.069 3.931 5 C -0.120 4.120 6 C -0.118 4.118 7 C 0.156 3.844 8 N -0.620 5.620 9 C 0.179 3.821 10 C -0.244 4.244 11 H 0.072 0.928 12 C -0.062 4.062 13 N -0.945 5.945 14 Si 0.965 3.035 15 H -0.263 1.263 16 H -0.292 1.292 17 H -0.296 1.296 18 C -0.142 4.142 19 H 0.062 0.938 20 H 0.096 0.904 21 H 0.045 0.955 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.055 0.945 30 H -0.004 1.004 31 H 0.017 0.983 32 H 0.028 0.972 33 H 0.244 0.756 34 H 0.092 0.908 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 -10.535 -11.177 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.316 6.316 4 C 0.011 3.989 5 C -0.158 4.158 6 C -0.139 4.139 7 C 0.031 3.969 8 N -0.343 5.343 9 C 0.034 3.966 10 C -0.375 4.375 11 H 0.090 0.910 12 C -0.256 4.256 13 N -0.593 5.593 14 Si 0.794 3.206 15 H -0.187 1.187 16 H -0.219 1.219 17 H -0.224 1.224 18 C -0.180 4.180 19 H 0.081 0.919 20 H 0.114 0.886 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.114 0.886 25 H 0.089 0.911 26 H 0.134 0.866 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.454 -10.307 -11.061 15.126 hybrid contribution -0.042 -0.053 1.473 1.474 sum -0.496 -10.360 -9.589 14.125 Atomic orbital electron populations 1.21772 0.93131 1.03441 1.02320 1.22734 0.96264 0.82967 1.00791 1.87891 1.21000 1.28095 1.94656 1.23115 0.80907 0.98681 0.96186 1.23198 1.02229 0.94535 0.95855 1.22918 0.99099 0.95551 0.96372 1.21062 0.95349 0.93594 0.86908 1.44239 1.66273 1.20727 1.03070 1.20502 0.94409 0.86269 0.95451 1.19537 1.10889 1.22161 0.84909 0.91006 1.25793 0.96774 1.01652 1.01379 1.70269 1.18979 1.44558 1.25472 0.85214 0.78004 0.77168 0.80203 1.18742 1.21889 1.22374 1.23325 1.00630 0.97275 0.96723 0.91938 0.88580 0.93542 0.91336 0.93556 0.88628 0.91077 0.86550 0.93809 0.92714 0.92685 0.98609 0.96396 0.95333 0.94658 0.88973 0.95128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 10.28 71.98 0.74 -2.38 16 2 C 0.05 1.16 6.50 71.98 0.47 1.63 16 3 O -0.40 -12.92 10.28 -148.98 -1.53 -14.45 16 4 C 0.07 2.03 4.37 31.12 0.14 2.17 16 5 C -0.12 -3.43 7.47 31.12 0.23 -3.20 16 6 C -0.12 -4.63 3.90 -10.27 -0.04 -4.67 16 7 C 0.16 6.45 5.55 86.38 0.48 6.93 16 8 N -0.62 -32.42 2.93 -726.93 -2.13 -34.54 16 9 C 0.18 9.43 9.01 127.77 1.15 10.58 16 10 C -0.24 -13.77 9.67 84.03 0.81 -12.95 16 11 H 0.07 3.89 7.84 -2.91 -0.02 3.87 16 12 C -0.06 -3.62 5.13 84.86 0.44 -3.18 16 13 N -0.94 -58.66 10.59 21.65 0.23 -58.43 16 14 Si 0.97 46.63 29.57 68.60 2.03 48.65 16 15 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 17 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 18 C -0.14 -5.25 7.47 31.12 0.23 -5.02 16 19 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 20 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.10 2.19 7.87 -2.38 -0.02 2.17 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.12 2.64 8.10 -2.39 -0.02 2.62 16 27 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 2.12 7.73 -2.39 -0.02 2.10 16 29 H 0.05 2.04 7.86 -2.39 -0.02 2.02 16 30 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 31 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16 32 H 0.03 1.27 7.84 -2.38 -0.02 1.26 16 33 H 0.24 14.74 8.31 -92.70 -0.77 13.97 16 34 H 0.09 3.15 7.90 -2.38 -0.02 3.13 16 35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -68.11 287.23 4.27 -63.84 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.02 Total: 5.04 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 4.65 Total: -10.11 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -1.90 Total: -92.97 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.53 Total: -14.45 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -68.11 4.27 -63.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388713037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.657 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds