Wall clock time and date at job start Thu Apr 9 2020 11:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47145 * 29.99590 * 4 3 2 6 6 C 1.52996 * 109.47031 * 269.99750 * 4 3 2 7 7 C 1.53002 * 109.47218 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47055 * 59.99829 * 7 6 4 9 9 C 1.52996 * 109.47247 * 300.00153 * 8 7 6 10 10 C 1.52998 * 109.46942 * 149.99763 * 4 3 2 11 11 H 1.08998 * 109.47343 * 59.99947 * 10 4 3 12 12 N 1.46498 * 109.47468 * 299.99657 * 10 4 3 13 13 C 1.36933 * 120.00198 * 154.99978 * 12 10 4 14 14 H 1.07998 * 120.00176 * 0.02562 * 13 12 10 15 15 C 1.38814 * 120.00090 * 180.02562 * 13 12 10 16 16 N 1.31620 * 120.00126 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00065 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47291 * 89.99944 * 17 15 13 19 19 H 1.48499 * 109.47040 * 209.99955 * 17 15 13 20 20 H 1.48504 * 109.46918 * 330.00075 * 17 15 13 21 21 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 22 22 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 23 23 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 25 25 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 26 26 H 1.09003 * 109.47460 * 300.00074 * 6 4 3 27 27 H 1.08997 * 109.47597 * 59.99980 * 6 4 3 28 28 H 1.08998 * 109.46844 * 299.99770 * 7 6 4 29 29 H 1.09004 * 109.47285 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47250 * 180.02562 * 8 7 6 31 31 H 1.09003 * 109.46993 * 60.00565 * 8 7 6 32 32 H 1.08998 * 109.47025 * 300.00287 * 9 8 7 33 33 H 1.09001 * 109.46920 * 179.97438 * 9 8 7 34 34 H 0.97005 * 119.99888 * 335.00428 * 12 10 4 35 35 H 0.97001 * 120.00099 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8635 0.6016 -0.5129 6 6 3.9385 1.5008 1.4433 7 6 5.4637 1.6223 1.4439 8 6 5.8732 2.9080 0.7228 9 6 5.3654 2.8675 -0.7199 10 6 3.8408 2.7457 -0.7207 11 1 3.4080 3.6043 -0.2073 12 7 3.3546 2.7069 -2.1022 13 6 3.1312 3.8741 -2.7824 14 1 3.3138 4.8233 -2.3008 15 6 2.6701 3.8373 -4.0912 16 7 2.4471 2.6805 -4.6782 17 14 2.3660 5.4296 -5.0195 18 1 3.6059 5.8328 -5.7302 19 1 1.2740 5.2271 -6.0053 20 1 1.9763 6.4947 -4.0609 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.5058 2.3594 1.9568 27 1 3.6464 0.5850 1.9572 28 1 5.8967 0.7639 0.9304 29 1 5.8255 1.6516 2.4718 30 1 6.9598 2.9944 0.7228 31 1 5.4402 3.7664 1.2365 32 1 5.7985 2.0091 -1.2335 33 1 5.6568 3.7837 -1.2335 34 1 3.1909 1.8543 -2.5350 35 1 2.1245 2.6548 -5.5926 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590764784.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:25 Heat of formation + Delta-G solvation = -58.388078 kcal Electronic energy + Delta-G solvation = -14990.391817 eV Core-core repulsion = 12601.828333 eV Total energy + Delta-G solvation = -2388.563485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.84425 -36.16924 -33.90633 -31.26125 -30.88528 -29.08304 -27.43843 -23.62703 -22.64933 -21.65638 -20.96619 -19.38796 -17.07719 -16.27481 -15.27399 -15.11483 -14.27189 -13.91707 -13.68253 -13.15269 -13.02092 -12.70637 -12.45018 -12.24697 -11.85957 -11.33320 -11.15945 -10.89888 -10.81578 -10.69625 -10.48545 -10.34605 -10.24466 -10.07719 -9.65075 -9.57485 -8.87176 -8.75401 -6.83626 -5.66607 -2.93587 3.49104 3.54159 3.56020 4.16975 4.66096 5.09485 5.13268 5.29853 5.38665 5.49545 5.61426 5.67394 5.71117 5.76309 5.77730 5.91876 5.96085 5.97791 6.10730 6.15957 6.24899 6.37171 6.41776 6.49891 6.55979 6.62980 6.70442 6.95256 7.10027 7.78648 7.87710 8.51716 9.62857 10.21456 10.56762 11.56425 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024686 B = 0.010346 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.959453 B = 2705.727373 C = 3606.920125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.087 3.913 5 H 0.053 0.947 6 C -0.137 4.137 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.134 4.134 10 C 0.183 3.817 11 H 0.052 0.948 12 N -0.717 5.717 13 C -0.229 4.229 14 H 0.069 0.931 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.904 3.096 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.283 1.283 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.382 0.618 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -4.818 11.855 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.284 6.284 4 C 0.029 3.971 5 H 0.071 0.929 6 C -0.175 4.175 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.174 4.174 10 C 0.073 3.927 11 H 0.070 0.930 12 N -0.356 5.356 13 C -0.361 4.361 14 H 0.087 0.913 15 C -0.211 4.211 16 N -0.583 5.583 17 Si 0.736 3.264 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.208 1.208 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.216 0.784 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.633 -4.476 11.778 12.872 hybrid contribution -0.046 0.282 -0.731 0.785 sum 2.587 -4.193 11.047 12.096 Atomic orbital electron populations 1.21702 0.94337 1.01403 1.03153 1.22388 0.95319 0.85034 0.99059 1.88022 1.20818 1.24835 1.94771 1.22422 0.80985 0.99538 0.94196 0.92905 1.22021 0.95842 1.01850 0.97837 1.21476 0.95281 0.98531 0.99861 1.21579 0.99784 0.97287 0.97152 1.22242 0.98518 1.02202 0.94454 1.20253 0.91348 0.94159 0.86980 0.93017 1.42267 1.78325 1.06420 1.08626 1.19233 1.36087 0.86324 0.94445 0.91306 1.24702 1.02591 0.96548 0.97298 1.69666 1.52528 1.22916 1.13224 0.86219 0.77380 0.83076 0.79726 1.21913 1.21895 1.20833 0.92407 0.91407 0.91871 0.93634 0.94623 0.91340 0.92602 0.92265 0.92423 0.92713 0.92258 0.92684 0.91527 0.78411 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 37.16 0.38 -1.75 16 2 C 0.06 0.95 6.47 37.16 0.24 1.19 16 3 O -0.37 -7.22 9.85 -35.23 -0.35 -7.57 16 4 C 0.09 1.59 2.13 -26.73 -0.06 1.53 16 5 H 0.05 0.96 7.79 -51.93 -0.40 0.55 16 6 C -0.14 -2.01 5.54 -26.73 -0.15 -2.15 16 7 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 8 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 9 C -0.13 -2.44 5.50 -26.76 -0.15 -2.59 16 10 C 0.18 3.85 2.46 -67.96 -0.17 3.69 16 11 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 12 N -0.72 -18.74 4.99 -53.45 -0.27 -19.01 16 13 C -0.23 -6.58 9.93 -15.06 -0.15 -6.73 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 16 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 17 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 19 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 25 H 0.04 0.49 7.87 -51.93 -0.41 0.08 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.38 10.67 7.80 -40.82 -0.32 10.36 16 35 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 283.47 15.07 4.27 4.27 Total: -1.00 -31.02 283.47 -7.25 -38.27 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.15 Total: 5.14 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -0.46 Total: -10.90 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.46 Total: -47.19 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.35 Total: -7.57 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.02 -7.25 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590764784.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.119 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds