Wall clock time and date at job start Thu Apr 9 2020 11:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47304 * 2 1 4 4 C 1.52992 * 109.47321 * 239.99859 * 2 1 3 5 5 C 1.50700 * 109.47257 * 174.99983 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 S 1.81398 * 109.47047 * 119.99705 * 2 1 3 14 14 C 1.81398 * 103.00423 * 295.00199 * 13 2 1 15 15 C 1.54264 * 110.03097 * 292.17012 * 14 13 2 16 16 C 1.54891 * 104.19409 * 217.10078 * 15 14 13 17 17 C 1.54894 * 102.74582 * 37.94288 * 16 15 14 18 18 C 1.53866 * 110.03678 * 174.99939 * 14 13 2 19 19 H 1.09007 * 109.46968 * 59.99854 * 1 2 3 20 20 H 1.08992 * 109.47130 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47150 * 300.00526 * 1 2 3 22 22 H 1.09004 * 109.47330 * 55.00006 * 4 2 1 23 23 H 1.08997 * 109.47279 * 295.00493 * 4 2 1 24 24 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 25 25 H 1.09004 * 110.01520 * 53.60294 * 14 13 2 26 26 H 1.09000 * 110.48816 * 335.77859 * 15 14 13 27 27 H 1.08993 * 110.49323 * 98.42468 * 15 14 13 28 28 H 1.08998 * 110.75991 * 279.62861 * 16 15 14 29 29 H 1.09007 * 110.75484 * 156.25127 * 16 15 14 30 30 H 1.08998 * 110.48276 * 203.38078 * 17 16 15 31 31 H 1.08993 * 110.60160 * 80.79261 * 17 16 15 32 32 H 1.08998 * 110.03600 * 238.57318 * 18 14 13 33 33 H 1.09002 * 110.02973 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3583 8 7 3.5769 -1.8412 -3.2973 9 14 6.0922 -1.0614 -2.4365 10 1 6.7000 -2.2147 -1.7254 11 1 6.5297 -1.0685 -3.8556 12 1 6.5268 0.2033 -1.7908 13 16 2.1347 -0.8550 1.4812 14 6 1.5664 0.2153 2.8309 15 6 2.3211 1.5602 2.7923 16 6 2.5337 1.9195 4.2838 17 6 2.8308 0.5425 4.9280 18 6 1.8904 -0.4316 4.1889 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.6055 -0.2618 -2.1369 23 1 1.7517 -1.7715 -1.2055 24 1 4.0612 -2.2473 -4.0331 25 1 0.4933 0.3860 2.7452 26 1 3.2801 1.4452 2.2872 27 1 1.7180 2.3221 2.2987 28 1 1.6304 2.3577 4.7082 29 1 3.3831 2.5924 4.4018 30 1 2.5994 0.5618 5.9930 31 1 3.8719 0.2618 4.7698 32 1 0.9747 -0.5743 4.7625 33 1 2.3888 -1.3891 4.0368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591124365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:28 Heat of formation + Delta-G solvation = -37.118808 kcal Electronic energy + Delta-G solvation = -12491.314945 eV Core-core repulsion = 10448.707974 eV Total energy + Delta-G solvation = -2042.606971 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.60892 -34.47517 -31.99917 -28.68860 -28.59646 -27.30416 -23.24920 -20.94343 -20.48640 -19.76856 -16.28498 -16.22219 -15.58651 -14.86508 -14.45529 -13.87922 -13.24872 -13.08063 -12.42153 -12.13111 -11.81368 -11.50078 -11.45107 -11.04877 -10.99103 -10.84230 -10.79121 -10.60612 -10.53075 -10.40924 -9.86805 -9.35387 -9.15579 -8.84021 -8.30428 -6.80019 -5.96110 -3.96270 2.47854 3.36818 3.42583 3.44657 3.46631 4.51157 4.66445 4.72382 5.03785 5.41252 5.49482 5.55362 5.58830 5.72261 5.74189 5.75857 5.83617 5.95221 5.96496 6.03329 6.10518 6.29591 6.36090 6.41940 6.49165 6.65778 6.79649 7.57575 7.69369 8.01953 8.41446 9.08513 9.66636 11.15585 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.034301 B = 0.008502 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.106031 B = 3292.687245 C = 3766.168405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 H 0.072 0.928 4 C 0.039 3.961 5 C -0.510 4.510 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 S -0.234 6.234 14 C -0.076 4.076 15 C -0.119 4.119 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.100 4.100 19 H 0.057 0.943 20 H 0.060 0.940 21 H 0.040 0.960 22 H 0.030 0.970 23 H 0.025 0.975 24 H 0.260 0.740 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 5.632 13.126 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 H 0.091 0.909 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 S -0.004 6.004 14 C -0.205 4.205 15 C -0.159 4.159 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.139 4.139 19 H 0.076 0.924 20 H 0.079 0.921 21 H 0.059 0.941 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.642 4.555 13.010 14.257 hybrid contribution 0.259 1.125 -0.326 1.200 sum -3.382 5.680 12.684 14.303 Atomic orbital electron populations 1.22101 0.95638 1.02091 1.00458 1.23330 0.95736 1.01428 0.96696 0.90937 1.19011 0.96450 0.95584 0.88840 1.21249 0.91591 1.34183 1.07844 0.91893 1.24994 0.98365 0.95376 0.95714 1.69964 1.35501 1.36075 1.12299 0.86584 0.85923 0.78555 0.76930 1.20645 1.21409 1.19853 1.87138 1.75841 1.37486 0.99962 1.23781 1.01610 0.97775 0.97332 1.22779 1.01167 0.95330 0.96577 1.22487 1.00970 0.96941 0.95643 1.22341 0.99963 0.94954 0.98690 1.21927 0.99515 0.99178 0.93244 0.92371 0.92051 0.94139 0.95195 0.95670 0.93077 0.90509 0.89913 0.91985 0.91901 0.91644 0.91950 0.91315 0.91578 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.10 37.16 0.34 -2.17 16 2 C -0.04 -0.91 2.66 -26.73 -0.07 -0.98 16 3 H 0.07 1.52 8.04 -51.92 -0.42 1.10 16 4 C 0.04 1.02 4.45 -27.89 -0.12 0.89 16 5 C -0.51 -14.49 8.53 -34.44 -0.29 -14.78 16 6 H 0.06 1.77 7.60 -52.49 -0.40 1.37 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 9 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 13 S -0.23 -4.68 19.41 -107.50 -2.09 -6.77 16 14 C -0.08 -1.15 3.20 -25.62 -0.08 -1.24 16 15 C -0.12 -1.69 6.16 -25.07 -0.15 -1.85 16 16 C -0.12 -1.39 6.91 -24.73 -0.17 -1.56 16 17 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 18 C -0.10 -1.31 6.48 -25.62 -0.17 -1.48 16 19 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 20 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 21 H 0.04 0.61 6.78 -51.93 -0.35 0.26 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.08 1.12 6.91 -51.93 -0.36 0.76 16 26 H 0.08 1.34 7.81 -51.93 -0.41 0.94 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.05 7.60 -51.93 -0.39 0.66 16 LS Contribution 277.79 15.07 4.19 4.19 Total: -1.00 -29.83 277.79 -8.87 -38.69 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.69 Total: -3.54 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -0.99 Total: -23.21 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: -4.68 SS G_CDS: -2.09 Total: -6.77 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.83 -8.87 -38.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591124365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.574 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds