Wall clock time and date at job start Thu Apr 9 2020 11:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47304 * 2 1 4 4 C 1.52992 * 109.47321 * 239.99859 * 2 1 3 5 5 C 1.50700 * 109.47257 * 174.99983 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 S 1.81398 * 109.47047 * 119.99705 * 2 1 3 14 14 C 1.81398 * 103.00423 * 295.00199 * 13 2 1 15 15 C 1.54264 * 110.03097 * 292.17012 * 14 13 2 16 16 C 1.54891 * 104.19409 * 217.10078 * 15 14 13 17 17 C 1.54894 * 102.74582 * 37.94288 * 16 15 14 18 18 C 1.53866 * 110.03678 * 174.99939 * 14 13 2 19 19 H 1.09007 * 109.46968 * 59.99854 * 1 2 3 20 20 H 1.08992 * 109.47130 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47150 * 300.00526 * 1 2 3 22 22 H 1.09004 * 109.47330 * 55.00006 * 4 2 1 23 23 H 1.08997 * 109.47279 * 295.00493 * 4 2 1 24 24 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 25 25 H 1.09004 * 110.01520 * 53.60294 * 14 13 2 26 26 H 1.09000 * 110.48816 * 335.77859 * 15 14 13 27 27 H 1.08993 * 110.49323 * 98.42468 * 15 14 13 28 28 H 1.08998 * 110.75991 * 279.62861 * 16 15 14 29 29 H 1.09007 * 110.75484 * 156.25127 * 16 15 14 30 30 H 1.08998 * 110.48276 * 203.38078 * 17 16 15 31 31 H 1.08993 * 110.60160 * 80.79261 * 17 16 15 32 32 H 1.08998 * 110.03600 * 238.57318 * 18 14 13 33 33 H 1.09002 * 110.02973 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3583 8 7 3.5769 -1.8412 -3.2973 9 14 6.0922 -1.0614 -2.4365 10 1 6.7000 -2.2147 -1.7254 11 1 6.5297 -1.0685 -3.8556 12 1 6.5268 0.2033 -1.7908 13 16 2.1347 -0.8550 1.4812 14 6 1.5664 0.2153 2.8309 15 6 2.3211 1.5602 2.7923 16 6 2.5337 1.9195 4.2838 17 6 2.8308 0.5425 4.9280 18 6 1.8904 -0.4316 4.1889 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.6055 -0.2618 -2.1369 23 1 1.7517 -1.7715 -1.2055 24 1 4.0612 -2.2473 -4.0331 25 1 0.4933 0.3860 2.7452 26 1 3.2801 1.4452 2.2872 27 1 1.7180 2.3221 2.2987 28 1 1.6304 2.3577 4.7082 29 1 3.3831 2.5924 4.4018 30 1 2.5994 0.5618 5.9930 31 1 3.8719 0.2618 4.7698 32 1 0.9747 -0.5743 4.7625 33 1 2.3888 -1.3891 4.0368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591124365.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:27 Heat of formation + Delta-G solvation = -52.627714 kcal Electronic energy + Delta-G solvation = -12491.987462 eV Core-core repulsion = 10448.707974 eV Total energy + Delta-G solvation = -2043.279488 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.65167 -36.39158 -34.04647 -29.95112 -29.62564 -29.07432 -25.25235 -22.50990 -21.54609 -21.05221 -18.50196 -17.44262 -16.93733 -16.55623 -16.19968 -15.10417 -14.76892 -14.27839 -14.20588 -13.71219 -13.46572 -13.29639 -12.75347 -12.69089 -12.42874 -12.35392 -12.01718 -11.95573 -11.86989 -11.61575 -11.49815 -11.24167 -11.10840 -10.58394 -10.33909 -8.40163 -8.19235 -6.26648 0.99969 1.38100 1.40140 1.50557 1.94342 2.41473 3.15455 3.62091 3.68396 4.06919 4.11895 4.25387 4.43840 4.52513 4.54071 4.57272 4.66234 4.81751 4.88574 4.93513 5.01775 5.06694 5.17273 5.21142 5.27020 5.33214 5.38242 5.49122 5.54159 5.78811 6.22002 6.85393 7.40291 8.92997 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.034301 B = 0.008502 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.106031 B = 3292.687245 C = 3766.168405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.033 4.033 3 H 0.070 0.930 4 C 0.045 3.955 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.263 1.263 13 S -0.294 6.294 14 C -0.058 4.058 15 C -0.122 4.122 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.101 4.101 19 H 0.065 0.935 20 H 0.055 0.945 21 H 0.069 0.931 22 H 0.009 0.991 23 H -0.007 1.007 24 H 0.262 0.738 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 6.972 15.199 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 H 0.089 0.911 4 C 0.007 3.993 5 C -0.560 4.560 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.188 1.188 13 S -0.065 6.065 14 C -0.186 4.186 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.139 4.139 19 H 0.084 0.916 20 H 0.074 0.926 21 H 0.088 0.912 22 H 0.027 0.973 23 H 0.012 0.988 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.672 5.905 15.086 16.611 hybrid contribution 0.234 0.709 -0.917 1.183 sum -3.437 6.613 14.169 16.009 Atomic orbital electron populations 1.22013 0.92790 1.02332 1.02254 1.23057 0.97992 1.00193 0.94925 0.91140 1.18820 0.95544 0.94083 0.90806 1.21559 0.92952 1.33839 1.07655 0.92135 1.25886 1.03398 0.95042 0.95386 1.70088 1.37462 1.37063 1.12998 0.85528 0.79918 0.78871 0.77272 1.20266 1.20595 1.18764 1.87252 1.77103 1.39936 1.02237 1.23904 1.02169 0.97045 0.95530 1.22754 0.99764 0.94906 0.98765 1.22477 1.02424 0.97121 0.93124 1.22350 0.98925 0.94325 1.00054 1.21989 1.00963 0.98642 0.92334 0.91636 0.92592 0.91195 0.97323 0.98816 0.92892 0.89172 0.92583 0.91290 0.89800 0.90657 0.89280 0.92393 0.89124 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.10 71.98 0.65 -3.94 16 2 C -0.03 -1.40 2.66 30.59 0.08 -1.32 16 3 H 0.07 2.96 8.04 -2.39 -0.02 2.94 16 4 C 0.05 2.44 4.45 29.85 0.13 2.57 16 5 C -0.52 -30.37 8.53 25.60 0.22 -30.15 16 6 H 0.06 3.47 7.60 -2.91 -0.02 3.45 16 7 C 0.00 0.01 5.46 84.66 0.46 0.47 16 8 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 9 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 13 S -0.29 -11.85 19.41 -56.49 -1.10 -12.95 16 14 C -0.06 -1.64 3.20 31.31 0.10 -1.54 16 15 C -0.12 -3.23 6.16 31.67 0.20 -3.03 16 16 C -0.11 -2.19 6.91 31.89 0.22 -1.97 16 17 C -0.12 -2.35 6.83 31.67 0.22 -2.13 16 18 C -0.10 -2.39 6.48 31.31 0.20 -2.18 16 19 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 20 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.07 1.96 6.78 -2.39 -0.02 1.94 16 22 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 23 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.09 2.35 6.91 -2.38 -0.02 2.33 16 26 H 0.06 1.78 7.81 -2.39 -0.02 1.76 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.55 7.60 -2.39 -0.02 1.54 16 Total: -1.00 -65.53 277.79 4.74 -60.79 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.05 Total: 5.21 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 2.48 Total: -43.22 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.28 Total: -57.83 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: -11.85 SS G_CDS: -1.10 Total: -12.95 kcal Total: -65.53 4.74 -60.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591124365.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.160 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds