Wall clock time and date at job start Thu Apr 9 2020 11:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 115.54981 * 2 1 4 4 O 1.20759 * 120.00189 * 214.42280 * 3 2 1 5 5 C 1.50705 * 119.99830 * 34.41960 * 3 2 1 6 6 S 1.81405 * 109.46754 * 179.97438 * 5 3 2 7 7 C 1.81399 * 102.99706 * 180.02562 * 6 5 3 8 8 C 1.50702 * 109.47410 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99606 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00217 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99909 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99980 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47266 * 59.99772 * 12 10 8 14 14 H 1.48496 * 109.47319 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46734 * 299.99911 * 12 10 8 16 16 C 1.53005 * 117.49946 * 145.67670 * 2 1 3 17 17 C 1.53008 * 117.49629 * 214.33612 * 2 1 3 18 18 H 1.08994 * 109.47145 * 85.58421 * 1 2 3 19 19 H 1.09008 * 109.46919 * 205.58067 * 1 2 3 20 20 H 1.09000 * 109.47137 * 325.57329 * 1 2 3 21 21 H 1.09000 * 109.47022 * 60.00207 * 5 3 2 22 22 H 1.08998 * 109.46894 * 299.99762 * 5 3 2 23 23 H 1.09004 * 109.47089 * 299.99939 * 7 6 5 24 24 H 1.09004 * 109.47568 * 59.99949 * 7 6 5 25 25 H 0.97002 * 119.99804 * 179.97438 * 11 10 8 26 26 H 1.08999 * 117.49141 * 214.99942 * 16 2 1 27 27 H 1.08999 * 117.49659 * 0.02562 * 16 2 1 28 28 H 1.08996 * 117.50108 * 359.96846 * 17 2 1 29 29 H 1.09000 * 117.49823 * 144.99965 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2187 1.5323 -0.5912 5 6 1.5336 2.5037 0.7377 6 16 2.5499 3.9947 0.5510 7 6 1.6248 5.2396 1.4917 8 6 2.3524 6.5579 1.4315 9 1 3.2790 6.6386 0.8826 10 6 1.8358 7.6606 2.0780 11 7 0.7077 7.5621 2.7468 12 14 2.7375 9.2949 2.0028 13 1 2.8549 9.7308 0.5880 14 1 1.9802 10.3140 2.7729 15 1 4.0938 9.1392 2.5870 16 6 2.2365 -1.1208 0.7653 17 6 2.2364 -1.1207 -0.7656 18 1 -0.3633 0.0791 -1.0246 19 1 -0.3633 -0.9270 0.4438 20 1 -0.3633 0.8477 0.5810 21 1 1.4485 2.2525 1.7950 22 1 0.5408 2.6864 0.3266 23 1 0.6296 5.3543 1.0618 24 1 1.5373 4.9195 2.5300 25 1 0.3444 8.3379 3.2020 26 1 3.1714 -0.8747 1.2687 27 1 1.6113 -1.8584 1.2683 28 1 1.6112 -1.8583 -1.2687 29 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591133812.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:31 Heat of formation + Delta-G solvation = -43.602427 kcal Electronic energy + Delta-G solvation = -11732.345606 eV Core-core repulsion = 9553.624389 eV Total energy + Delta-G solvation = -2178.721216 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 214.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.05763 -37.68863 -35.31326 -31.97229 -30.66354 -29.00383 -25.35047 -24.22569 -23.40109 -19.62048 -18.66193 -17.62105 -17.37926 -16.50311 -16.38451 -15.72912 -15.30827 -14.61191 -14.50586 -14.25895 -13.96497 -13.52689 -13.42735 -13.18374 -12.73427 -12.60925 -12.40362 -12.04560 -11.65737 -11.57082 -10.97094 -10.76046 -10.69807 -10.66360 -8.56610 -8.35555 -6.48573 0.76793 0.79585 1.38960 1.42029 1.50923 1.94901 2.35553 2.72417 2.84973 2.99028 3.63128 3.88724 3.95437 4.11451 4.16517 4.33015 4.69530 4.80654 4.90274 4.90617 4.92075 4.94393 4.98535 5.19728 5.30790 5.54735 5.86727 6.38547 6.57726 7.19278 8.76308 Molecular weight = 214.08amu Principal moments of inertia in cm(-1) A = 0.074838 B = 0.005704 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.052479 B = 4907.716665 C = 5144.705428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.197 4.197 3 C 0.407 3.593 4 O -0.473 6.473 5 C -0.139 4.139 6 S -0.300 6.300 7 C 0.090 3.910 8 C -0.541 4.541 9 H 0.058 0.942 10 C 0.018 3.982 11 N -0.922 5.922 12 Si 0.975 3.025 13 H -0.268 1.268 14 H -0.273 1.273 15 H -0.268 1.268 16 C -0.135 4.135 17 C -0.149 4.149 18 H 0.068 0.932 19 H 0.091 0.909 20 H 0.066 0.934 21 H 0.125 0.875 22 H 0.127 0.873 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.272 0.728 26 H 0.087 0.913 27 H 0.137 0.863 28 H 0.130 0.870 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -16.564 -2.937 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.199 4.199 3 C 0.283 3.717 4 O -0.347 6.347 5 C -0.287 4.287 6 S -0.073 6.073 7 C -0.057 4.057 8 C -0.580 4.580 9 H 0.076 0.924 10 C -0.183 4.183 11 N -0.561 5.561 12 Si 0.798 3.202 13 H -0.193 1.193 14 H -0.197 1.197 15 H -0.192 1.192 16 C -0.172 4.172 17 C -0.186 4.186 18 H 0.087 0.913 19 H 0.109 0.891 20 H 0.085 0.915 21 H 0.143 0.857 22 H 0.145 0.855 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.155 0.845 28 H 0.148 0.852 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.235 -16.253 -3.694 16.713 hybrid contribution -0.821 1.032 0.806 1.546 sum -2.056 -15.220 -2.888 15.628 Atomic orbital electron populations 1.21401 0.88024 1.04221 1.03195 1.21976 0.98008 0.88283 1.11637 1.23572 0.83447 0.89457 0.75193 1.90397 1.23106 1.84912 1.36322 1.24026 1.03861 0.94619 1.06243 1.87130 1.40063 1.07403 1.72753 1.20793 0.95978 0.93786 0.95143 1.20940 1.08875 0.94044 1.34147 0.92410 1.25871 0.95770 1.02830 0.93858 1.70032 1.20434 1.32335 1.33280 0.85347 0.78572 0.77460 0.78791 1.19253 1.19721 1.19244 1.23266 1.01696 0.97345 0.94845 1.23151 1.02094 0.98405 0.94981 0.91305 0.89063 0.91483 0.85674 0.85531 0.96151 0.96175 0.91929 0.89443 0.84497 0.85151 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.71 71.98 0.70 -1.02 15 2 C -0.20 -4.15 2.58 -52.92 -0.14 -4.28 15 3 C 0.41 12.75 6.79 29.10 0.20 12.95 15 4 O -0.47 -18.58 15.76 -1.45 -0.02 -18.61 15 5 C -0.14 -4.68 5.47 71.24 0.39 -4.29 15 6 S -0.30 -14.16 20.80 -56.49 -1.17 -15.33 15 7 C 0.09 4.90 5.70 71.24 0.41 5.30 15 8 C -0.54 -31.82 9.13 25.60 0.23 -31.59 15 9 H 0.06 3.43 7.71 -2.91 -0.02 3.40 15 10 C 0.02 1.02 5.46 84.65 0.46 1.48 15 11 N -0.92 -54.21 13.29 21.45 0.28 -53.93 15 12 Si 0.98 44.31 29.54 68.60 2.03 46.33 15 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 16 C -0.13 -2.26 9.88 30.62 0.30 -1.96 15 17 C -0.15 -2.73 9.77 30.62 0.30 -2.43 15 18 H 0.07 1.01 8.14 -2.39 -0.02 0.99 15 19 H 0.09 0.95 7.90 -2.38 -0.02 0.94 15 20 H 0.07 1.09 6.52 -2.39 -0.02 1.07 15 21 H 0.13 3.74 8.14 -2.39 -0.02 3.72 15 22 H 0.13 3.76 7.32 -2.39 -0.02 3.74 15 23 H 0.02 1.13 8.14 -2.39 -0.02 1.11 15 24 H 0.02 1.12 8.14 -2.39 -0.02 1.10 15 25 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 26 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 27 H 0.14 1.44 8.05 -2.39 -0.02 1.42 15 28 H 0.13 1.63 8.14 -2.39 -0.02 1.61 15 29 H 0.08 1.93 7.67 -2.39 -0.02 1.91 15 Total: -1.00 -68.98 267.53 5.09 -63.89 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.12 Total: 3.47 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 2.85 Total: -25.83 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.28 Total: -53.93 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.02 Total: -18.61 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -14.16 SS G_CDS: -1.17 Total: -15.33 kcal Total: -68.98 5.09 -63.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591133812.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.289 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds