Wall clock time and date at job start Thu Apr 9 2020 11:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42893 * 113.99977 * 2 1 4 4 H 1.09003 * 110.02047 * 29.93594 * 3 2 1 5 5 C 1.54268 * 110.03072 * 268.54526 * 3 2 1 6 6 C 1.54889 * 104.19728 * 217.10646 * 5 3 2 7 7 C 1.54897 * 102.74591 * 37.94393 * 6 5 3 8 8 C 1.53873 * 110.03017 * 151.38304 * 3 2 1 9 9 H 1.09005 * 110.03108 * 238.56209 * 8 3 2 10 10 C 1.52994 * 110.03450 * 359.97438 * 8 3 2 11 11 N 1.46903 * 109.47257 * 183.62405 * 10 8 3 12 12 C 1.46904 * 110.99739 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.46749 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00233 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99647 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00654 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99696 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47253 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46807 * 120.00199 * 17 15 13 20 20 H 1.48503 * 109.47327 * 239.99900 * 17 15 13 21 21 H 1.08998 * 109.46855 * 300.00139 * 1 2 3 22 22 H 1.09000 * 109.46525 * 59.99668 * 1 2 3 23 23 H 1.08998 * 109.47071 * 179.97438 * 1 2 3 24 24 H 1.08998 * 110.48695 * 98.42904 * 5 3 2 25 25 H 1.08999 * 110.48827 * 335.78463 * 5 3 2 26 26 H 1.09000 * 110.75622 * 279.63120 * 6 5 3 27 27 H 1.09002 * 110.76161 * 156.25634 * 6 5 3 28 28 H 1.08998 * 110.48266 * 80.73866 * 7 6 5 29 29 H 1.09000 * 110.48216 * 203.37721 * 7 6 5 30 30 H 1.09000 * 109.46958 * 303.62375 * 10 8 3 31 31 H 1.08998 * 109.47244 * 63.62359 * 10 8 3 32 32 H 1.00896 * 111.00000 * 303.95227 * 11 10 8 33 33 H 1.08992 * 109.47426 * 300.00010 * 12 11 10 34 34 H 1.09004 * 109.47301 * 60.00475 * 12 11 10 35 35 H 0.96994 * 120.00202 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3513 2.0073 0.5111 5 6 2.2588 1.7732 -1.4489 6 6 3.5954 2.5521 -1.3726 7 6 4.4194 1.7186 -0.3598 8 6 3.3840 1.2707 0.6924 9 1 3.3924 1.9563 1.5398 10 6 3.6972 -0.1504 1.1646 11 7 4.9694 -0.1532 1.8991 12 6 5.3028 -1.5044 2.3693 13 6 6.6114 -1.4678 3.1159 14 1 7.1421 -0.5341 3.2300 15 6 7.1306 -2.6261 3.6541 16 7 6.4843 -3.7630 3.5156 17 14 8.7530 -2.5808 4.5789 18 1 9.2759 -1.1909 4.5936 19 1 8.5407 -3.0441 5.9738 20 1 9.7320 -3.4714 3.9052 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.4539 2.4285 -1.7816 25 1 2.3543 0.9160 -2.1154 26 1 3.4326 3.5630 -0.9990 27 1 4.0865 2.5730 -2.3455 28 1 4.8637 0.8527 -0.8505 29 1 5.1911 2.3342 0.1023 30 1 2.8989 -0.4999 1.8194 31 1 3.7746 -0.8114 0.3014 32 1 5.7138 0.2274 1.3343 33 1 4.5157 -1.8629 3.0325 34 1 5.3913 -2.1751 1.5146 35 1 6.8494 -4.5778 3.8946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591758282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:34 Heat of formation + Delta-G solvation = -64.775656 kcal Electronic energy + Delta-G solvation = -14471.866865 eV Core-core repulsion = 12083.026394 eV Total energy + Delta-G solvation = -2388.840471 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.22663 -36.16165 -34.61773 -32.35861 -29.53600 -28.15055 -26.38921 -25.83756 -23.15866 -21.38879 -20.58498 -19.32470 -16.79921 -16.20765 -15.71125 -15.07326 -14.74532 -14.39612 -14.27523 -13.76031 -12.91858 -12.71003 -12.59854 -12.12417 -11.67466 -11.38606 -11.27996 -11.12300 -10.95367 -10.74891 -10.62119 -10.48615 -10.24379 -10.17459 -9.74324 -9.41726 -9.05639 -8.41357 -7.13789 -5.96236 -3.97925 3.35095 3.41878 3.47359 3.89559 4.48229 4.62423 4.68027 4.98213 5.20759 5.32551 5.35112 5.39357 5.43686 5.56969 5.65610 5.71402 5.76286 5.81490 5.89576 6.01236 6.12834 6.20380 6.31362 6.42542 6.69395 6.78265 7.34078 7.40785 7.55318 7.87339 8.22983 8.53303 8.74909 9.12472 9.66713 11.15017 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045996 B = 0.006084 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.600134 B = 4601.078072 C = 5062.061825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.088 3.912 4 H 0.060 0.940 5 C -0.146 4.146 6 C -0.122 4.122 7 C -0.119 4.119 8 C -0.088 4.088 9 H 0.084 0.916 10 C 0.080 3.920 11 N -0.694 5.694 12 C 0.194 3.806 13 C -0.511 4.511 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.039 0.961 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.022 0.978 32 H 0.325 0.675 33 H 0.027 0.973 34 H -0.015 1.015 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 11.037 -9.322 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.030 3.970 4 H 0.078 0.922 5 C -0.184 4.184 6 C -0.160 4.160 7 C -0.157 4.157 8 C -0.107 4.107 9 H 0.102 0.898 10 C -0.050 4.050 11 N -0.324 5.324 12 C 0.067 3.933 13 C -0.550 4.550 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.141 0.859 33 H 0.045 0.955 34 H 0.003 0.997 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.898 10.851 -8.663 17.052 hybrid contribution 0.795 -0.370 -0.321 0.934 sum -9.103 10.481 -8.984 16.536 Atomic orbital electron populations 1.22749 0.82013 1.02511 0.99396 1.88057 1.18760 1.27529 1.94822 1.22872 0.94959 0.84236 0.94983 0.92179 1.22899 0.97722 1.00222 0.97576 1.22416 0.95510 0.98562 0.99505 1.22428 0.97607 0.99663 0.95989 1.21935 0.92003 0.99295 0.97429 0.89814 1.21617 0.93921 0.93221 0.96208 1.60705 1.03338 1.26930 1.41472 1.19527 0.96370 0.83129 0.94270 1.21263 1.05450 0.94240 1.34069 0.91977 1.25004 0.97746 0.95405 0.96550 1.69983 1.38964 0.98917 1.45975 0.86440 0.83453 0.78015 0.79475 1.19677 1.21039 1.21135 0.94257 0.94611 0.89874 0.92069 0.90619 0.91607 0.91604 0.91414 0.91084 0.91586 0.95999 0.85882 0.95516 0.99710 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 101.05 1.10 1.43 16 2 O -0.37 -5.55 8.47 -35.23 -0.30 -5.84 16 3 C 0.09 1.17 3.35 -25.61 -0.09 1.08 16 4 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 5 C -0.15 -1.66 6.55 -25.07 -0.16 -1.83 16 6 C -0.12 -1.34 6.91 -24.73 -0.17 -1.51 16 7 C -0.12 -1.62 5.50 -25.07 -0.14 -1.75 16 8 C -0.09 -1.34 3.16 -89.51 -0.28 -1.62 16 9 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 10 C 0.08 1.57 4.07 -3.83 -0.02 1.56 16 11 N -0.69 -15.84 6.49 -115.06 -0.75 -16.59 16 12 C 0.19 5.38 5.44 -4.97 -0.03 5.36 16 13 C -0.51 -15.06 9.32 -34.44 -0.32 -15.38 16 14 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 17 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H 0.04 0.39 8.10 -51.93 -0.42 -0.03 16 22 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.00 7.78 -51.93 -0.40 0.59 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.38 7.71 -51.93 -0.40 0.98 16 31 H 0.02 0.45 7.90 -51.93 -0.41 0.04 16 32 H 0.33 7.02 7.90 -39.29 -0.31 6.71 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H -0.01 -0.44 8.14 -51.93 -0.42 -0.86 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 284.40 15.07 4.29 4.29 Total: -1.00 -31.54 284.40 -7.37 -38.91 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.12 Total: 0.24 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -0.21 Total: -11.18 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.01 Total: -43.59 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.30 Total: -5.84 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.54 -7.37 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591758282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.866 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds