Wall clock time and date at job start Thu Apr 9 2020 11:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99706 * 2 1 4 4 H 1.09001 * 110.01869 * 331.38903 * 3 2 1 5 5 C 1.54263 * 110.07344 * 92.80959 * 3 2 1 6 6 C 1.54895 * 104.19474 * 142.91413 * 5 3 2 7 7 C 1.54969 * 102.77900 * 322.08227 * 6 5 3 8 8 C 1.53879 * 110.02722 * 210.00150 * 3 2 1 9 9 H 1.08998 * 110.03026 * 121.33692 * 8 3 2 10 10 C 1.52993 * 110.03459 * 359.94997 * 8 3 2 11 11 N 1.46905 * 109.47039 * 175.69183 * 10 8 3 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 8 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00211 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99630 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46926 * 90.00445 * 17 15 13 19 19 H 1.48506 * 109.46987 * 209.99731 * 17 15 13 20 20 H 1.48494 * 109.47527 * 330.00217 * 17 15 13 21 21 H 1.08999 * 109.47293 * 299.99989 * 1 2 3 22 22 H 1.08997 * 109.47635 * 59.99485 * 1 2 3 23 23 H 1.09002 * 109.47680 * 180.02562 * 1 2 3 24 24 H 1.08999 * 110.49115 * 261.59376 * 5 3 2 25 25 H 1.09006 * 110.48599 * 24.10881 * 5 3 2 26 26 H 1.08996 * 110.75863 * 80.37293 * 6 5 3 27 27 H 1.08999 * 110.75609 * 203.56267 * 6 5 3 28 28 H 1.08999 * 110.47623 * 279.24009 * 7 6 5 29 29 H 1.08995 * 110.53021 * 156.56497 * 7 6 5 30 30 H 1.09001 * 109.47393 * 55.69464 * 10 8 3 31 31 H 1.08998 * 109.47408 * 295.69109 * 10 8 3 32 32 H 1.00901 * 110.99869 * 56.04956 * 11 10 8 33 33 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 34 34 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 35 35 H 0.96999 * 120.00132 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3405 2.0121 -0.4904 5 6 2.2903 1.7603 1.4472 6 6 3.6248 2.5406 1.3485 7 6 4.4272 1.7173 0.3094 8 6 3.3683 1.2778 -0.7229 9 1 3.3574 1.9703 -1.5646 10 6 3.6717 -0.1390 -1.2142 11 7 4.9189 -0.1315 -1.9904 12 6 5.2423 -1.4783 -2.4800 13 6 6.5252 -1.4311 -3.2693 14 1 7.0477 -0.4944 -3.3951 15 6 7.0313 -2.5838 -3.8318 16 7 8.1506 -2.5426 -4.5211 17 14 6.1270 -4.2038 -3.6149 18 1 5.1585 -4.3828 -4.7263 19 1 7.1047 -5.3217 -3.6255 20 1 5.3991 -4.1951 -2.3206 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.4927 2.4122 1.8035 25 1 2.3985 0.8973 2.1041 26 1 3.4535 3.5548 0.9877 27 1 4.1355 2.5557 2.3113 28 1 4.8831 0.8473 0.7821 29 1 5.1878 2.3375 -0.1648 30 1 2.8536 -0.4881 -1.8443 31 1 3.7805 -0.8049 -0.3582 32 1 5.6800 0.2489 -1.4482 33 1 5.3620 -2.1538 -1.6329 34 1 4.4351 -1.8361 -3.1190 35 1 8.5068 -3.3535 -4.9165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591758283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:35 Heat of formation + Delta-G solvation = -83.255652 kcal Electronic energy + Delta-G solvation = -14524.481468 eV Core-core repulsion = 12134.839644 eV Total energy + Delta-G solvation = -2389.641824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.32912 -37.49846 -36.29674 -34.49209 -31.34776 -29.17130 -28.47793 -26.91639 -24.67714 -23.09467 -21.62760 -20.55064 -19.00030 -17.69248 -17.01929 -16.64487 -16.10993 -15.93576 -15.41137 -15.09362 -14.76477 -14.43946 -14.19538 -13.73337 -13.32267 -13.13882 -12.71224 -12.52965 -12.29202 -12.09023 -11.94583 -11.83937 -11.59518 -11.52151 -11.43359 -11.23202 -10.82599 -10.42254 -9.14743 -8.32193 -6.36611 1.33053 1.34306 1.46290 2.32477 2.91438 3.01409 3.42376 3.65253 3.76078 4.06802 4.31761 4.38467 4.45302 4.52506 4.56943 4.63864 4.70671 4.76462 4.79810 4.89734 4.90546 5.00922 5.07353 5.09843 5.20067 5.25835 5.32920 5.47233 5.51467 5.95650 6.38053 6.55748 6.64961 6.76775 7.28617 8.84471 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.039934 B = 0.006791 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.991188 B = 4121.923232 C = 4636.563093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.088 3.912 4 H 0.079 0.921 5 C -0.140 4.140 6 C -0.114 4.114 7 C -0.122 4.122 8 C -0.088 4.088 9 H 0.083 0.917 10 C 0.085 3.915 11 N -0.690 5.690 12 C 0.175 3.825 13 C -0.529 4.529 14 H 0.039 0.961 15 C 0.010 3.990 16 N -0.945 5.945 17 Si 0.950 3.050 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.256 1.256 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.014 0.986 32 H 0.335 0.665 33 H -0.018 1.018 34 H 0.020 0.980 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.944 8.199 13.170 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.030 3.970 4 H 0.097 0.903 5 C -0.178 4.178 6 C -0.151 4.151 7 C -0.160 4.160 8 C -0.107 4.107 9 H 0.101 0.899 10 C -0.045 4.045 11 N -0.321 5.321 12 C 0.046 3.954 13 C -0.568 4.568 14 H 0.058 0.942 15 C -0.188 4.188 16 N -0.586 5.586 17 Si 0.773 3.227 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.180 1.180 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.153 0.847 33 H -0.001 1.001 34 H 0.038 0.962 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.034 8.112 12.481 21.878 hybrid contribution 0.246 -1.099 0.412 1.199 sum -15.788 7.013 12.892 21.556 Atomic orbital electron populations 1.22923 0.80141 1.03339 1.00737 1.87983 1.20928 1.28501 1.95086 1.22932 0.93740 0.84321 0.96043 0.90310 1.22854 0.98626 1.00314 0.95963 1.22409 0.94874 0.98808 0.99037 1.22436 0.97500 0.99724 0.96332 1.21932 0.94466 0.96187 0.98092 0.89876 1.21653 0.91772 0.96373 0.94664 1.60443 1.05833 1.23585 1.42205 1.19721 0.94766 0.87291 0.93583 1.21340 1.07295 0.95341 1.32785 0.94239 1.25858 0.95642 1.03101 0.94194 1.70041 1.22121 1.30083 1.36310 0.85673 0.78750 0.78441 0.79818 1.18937 1.20145 1.18013 0.92732 0.93450 0.89404 0.89560 0.91629 0.89944 0.90369 0.92943 0.91070 0.92484 0.96769 0.84712 1.00079 0.96191 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.85 113.37 1.23 1.68 16 2 O -0.41 -10.68 8.47 -148.98 -1.26 -11.95 16 3 C 0.09 2.02 3.36 31.32 0.11 2.12 16 4 H 0.08 1.52 7.80 -2.39 -0.02 1.50 16 5 C -0.14 -2.62 6.56 31.67 0.21 -2.41 16 6 C -0.11 -2.09 6.91 31.92 0.22 -1.87 16 7 C -0.12 -3.06 5.54 31.70 0.18 -2.89 16 8 C -0.09 -2.47 3.16 -10.07 -0.03 -2.50 16 9 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 10 C 0.08 3.10 4.07 86.30 0.35 3.45 16 11 N -0.69 -30.55 6.49 -517.93 -3.36 -33.92 16 12 C 0.18 9.05 4.51 85.56 0.39 9.43 16 13 C -0.53 -32.16 9.87 25.60 0.25 -31.91 16 14 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 15 C 0.01 0.59 5.47 84.66 0.46 1.05 16 16 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 17 Si 0.95 45.88 27.47 68.60 1.88 47.77 16 18 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.83 6.54 99.48 0.65 -11.18 16 21 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.37 8.08 -2.38 -0.02 1.36 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.46 7.77 -2.39 -0.02 1.44 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 2.19 7.68 -2.39 -0.02 2.17 16 31 H 0.01 0.54 7.91 -2.39 -0.02 0.53 16 32 H 0.34 14.41 7.93 -89.69 -0.71 13.70 16 33 H -0.02 -0.95 7.20 -2.39 -0.02 -0.97 16 34 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 35 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -68.77 280.82 1.20 -67.57 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.28 Total: 14.48 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 3.36 Total: -23.84 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -3.06 Total: -94.04 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.26 Total: -11.95 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.88 Total: 47.77 kcal Total: -68.77 1.20 -67.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591758283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.681 kcal (2) G-P(sol) polarization free energy of solvation -68.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds