Wall clock time and date at job start Thu Apr 9 2020 11:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00093 * 2 1 4 4 H 1.08994 * 110.05769 * 28.58990 * 3 2 1 5 5 C 1.54261 * 110.03318 * 267.16861 * 3 2 1 6 6 C 1.54888 * 104.19672 * 264.32585 * 5 3 2 7 7 C 1.54891 * 102.75120 * 322.06034 * 6 5 3 8 8 C 1.53876 * 110.02782 * 150.00248 * 3 2 1 9 9 H 1.08998 * 110.03319 * 359.97438 * 8 3 2 10 10 C 1.52999 * 110.03160 * 238.56973 * 8 3 2 11 11 N 1.46900 * 109.47125 * 175.00196 * 10 8 3 12 12 C 1.46903 * 110.99969 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47211 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99798 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00330 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99802 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00424 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46761 * 59.99717 * 17 15 13 19 19 H 1.48494 * 109.47616 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46900 * 300.00202 * 17 15 13 21 21 H 1.09007 * 109.46937 * 299.99683 * 1 2 3 22 22 H 1.08996 * 109.47357 * 59.99087 * 1 2 3 23 23 H 1.08995 * 109.47618 * 180.02562 * 1 2 3 24 24 H 1.09000 * 110.48928 * 23.00593 * 5 3 2 25 25 H 1.09001 * 110.48691 * 145.51620 * 5 3 2 26 26 H 1.09005 * 110.75648 * 80.37263 * 6 5 3 27 27 H 1.08999 * 110.75852 * 203.74195 * 6 5 3 28 28 H 1.09004 * 110.48613 * 279.26383 * 7 6 5 29 29 H 1.08994 * 110.48745 * 156.61801 * 7 6 5 30 30 H 1.08998 * 109.47264 * 295.00259 * 10 8 3 31 31 H 1.08998 * 109.47519 * 55.00258 * 10 8 3 32 32 H 1.00903 * 111.00291 * 56.04887 * 11 10 8 33 33 H 1.08999 * 109.46848 * 299.99533 * 12 11 10 34 34 H 1.09000 * 109.47226 * 59.99890 * 12 11 10 35 35 H 0.97007 * 119.99951 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3410 2.0126 0.4899 5 6 2.2906 1.7590 -1.4475 6 6 3.7774 1.3922 -1.6793 7 6 4.4267 1.7153 -0.3107 8 6 3.3684 1.2776 0.7228 9 1 3.5839 0.2684 1.0739 10 6 3.3541 2.2513 1.9029 11 7 4.6103 2.1282 2.6545 12 6 4.6320 3.0500 3.7981 13 6 5.9329 2.8960 4.5429 14 1 6.6698 2.1841 4.2012 15 6 6.1822 3.6630 5.6611 16 7 5.2847 4.5295 6.0775 17 14 7.7945 3.4715 6.5848 18 1 8.9260 3.7846 5.6755 19 1 7.8165 4.4034 7.7407 20 1 7.9229 2.0746 7.0720 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.6512 1.2203 -2.1468 25 1 2.1411 2.8342 -1.5461 26 1 3.8817 0.3332 -1.9159 27 1 4.2093 2.0093 -2.4672 28 1 4.6244 2.7839 -0.2251 29 1 5.3461 1.1446 -0.1804 30 1 3.2514 3.2708 1.5314 31 1 2.5147 2.0168 2.5574 32 1 5.4072 2.2777 2.0539 33 1 4.5380 4.0753 3.4401 34 1 3.8013 2.8206 4.4655 35 1 5.4602 5.0694 6.8641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591758284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:36 Heat of formation + Delta-G solvation = -88.199859 kcal Electronic energy + Delta-G solvation = -14345.586544 eV Core-core repulsion = 11955.730324 eV Total energy + Delta-G solvation = -2389.856221 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.32286 -37.62697 -36.20010 -34.44911 -31.09594 -29.17489 -28.21645 -27.17809 -24.66237 -23.34310 -21.50945 -20.78534 -18.63562 -17.75610 -16.89362 -16.63636 -16.28717 -16.12164 -15.16383 -15.06655 -14.75901 -14.45467 -14.00874 -13.50704 -13.28623 -12.97741 -12.75382 -12.52508 -12.44507 -12.21257 -12.01146 -11.92844 -11.56336 -11.51299 -11.46215 -11.27557 -10.66514 -10.45741 -9.14806 -8.23475 -6.35328 1.41319 1.45397 1.53451 2.39837 2.80473 3.09704 3.52124 3.62530 3.80080 3.97540 4.30678 4.37485 4.41951 4.49277 4.53125 4.58067 4.68601 4.79746 4.84135 4.88779 4.95368 5.02522 5.04966 5.16064 5.22295 5.26097 5.31496 5.48833 5.60852 6.00318 6.34361 6.43116 6.70720 6.87680 7.35878 8.88172 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050719 B = 0.005575 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.932181 B = 5021.604611 C = 5294.409719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.087 3.913 4 H 0.063 0.937 5 C -0.139 4.139 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.082 4.082 9 H 0.073 0.927 10 C 0.071 3.929 11 N -0.689 5.689 12 C 0.208 3.792 13 C -0.539 4.539 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.976 3.024 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.269 1.269 21 H 0.040 0.960 22 H 0.054 0.946 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.049 0.951 32 H 0.337 0.663 33 H -0.038 1.038 34 H -0.003 1.003 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 -5.543 -15.392 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.029 3.971 4 H 0.081 0.919 5 C -0.177 4.177 6 C -0.150 4.150 7 C -0.157 4.157 8 C -0.101 4.101 9 H 0.092 0.908 10 C -0.059 4.059 11 N -0.320 5.320 12 C 0.080 3.920 13 C -0.577 4.577 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.800 3.200 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.194 1.194 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.115 0.885 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.154 0.846 33 H -0.020 1.020 34 H 0.015 0.985 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.776 -6.113 -14.876 17.452 hybrid contribution 0.367 1.229 0.524 1.386 sum -6.409 -4.884 -14.351 16.459 Atomic orbital electron populations 1.22955 0.80009 1.03695 1.00553 1.87907 1.21024 1.28249 1.95124 1.22829 0.93886 0.84261 0.96168 0.91931 1.22833 0.97787 1.01645 0.95422 1.22417 0.94556 1.01687 0.96373 1.22411 0.97786 1.00945 0.94540 1.21800 0.94622 0.99543 0.94176 0.90808 1.21989 0.92979 0.96601 0.94292 1.60519 1.03940 1.56287 1.11218 1.19211 0.96273 0.87955 0.88588 1.21522 1.02780 1.21586 1.11801 0.91687 1.25985 1.01150 0.94472 0.98099 1.70091 1.36807 1.24981 1.25629 0.85341 0.78717 0.78216 0.77752 1.18918 1.20665 1.19363 0.94163 0.92704 0.88471 0.90130 0.90010 0.91310 0.89945 0.91887 0.91175 0.96007 0.93206 0.84562 1.02050 0.98481 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.85 113.37 1.23 1.69 16 2 O -0.40 -10.82 10.25 -148.98 -1.53 -12.34 16 3 C 0.09 2.24 3.04 31.32 0.10 2.33 16 4 H 0.06 1.59 7.34 -2.39 -0.02 1.57 16 5 C -0.14 -2.85 6.57 31.67 0.21 -2.64 16 6 C -0.11 -2.34 6.91 31.89 0.22 -2.12 16 7 C -0.12 -3.10 5.56 31.67 0.18 -2.93 16 8 C -0.08 -2.52 2.96 -10.07 -0.03 -2.55 16 9 H 0.07 2.54 7.95 -2.39 -0.02 2.52 16 10 C 0.07 2.67 4.80 86.30 0.41 3.08 16 11 N -0.69 -31.17 6.49 -517.93 -3.36 -34.53 16 12 C 0.21 11.57 5.44 85.56 0.47 12.04 16 13 C -0.54 -31.58 9.32 25.60 0.24 -31.34 16 14 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 17 Si 0.98 44.81 29.54 68.60 2.03 46.84 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H 0.04 0.77 8.10 -2.38 -0.02 0.75 16 22 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 23 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.08 1.47 8.07 -2.39 -0.02 1.45 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.68 7.76 -2.38 -0.02 1.66 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.02 0.81 8.00 -2.39 -0.02 0.79 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 32 H 0.34 14.28 7.96 -89.69 -0.71 13.56 16 33 H -0.04 -2.26 8.14 -2.39 -0.02 -2.28 16 34 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -65.86 286.37 1.23 -64.64 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.33 Total: 14.46 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 3.48 Total: -21.90 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -3.08 Total: -91.69 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.53 Total: -12.34 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.86 1.23 -64.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591758284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.564 kcal (2) G-P(sol) polarization free energy of solvation -65.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds