Wall clock time and date at job start Thu Apr 9 2020 11:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47398 * 2 1 4 4 C 1.53005 * 109.47158 * 240.00321 * 2 1 3 5 5 C 1.53005 * 109.47213 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47066 * 59.99392 * 5 4 2 7 7 C 1.52997 * 109.47415 * 299.99958 * 6 5 4 8 8 C 1.52997 * 109.47571 * 120.00093 * 2 1 3 9 9 H 1.08998 * 109.47021 * 59.99859 * 8 2 1 10 10 S 1.81403 * 109.46931 * 300.00274 * 8 2 1 11 11 C 1.81397 * 103.00144 * 174.99612 * 10 8 2 12 12 C 1.50694 * 109.47289 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 H 1.09000 * 109.47231 * 299.99803 * 1 2 3 21 21 H 1.09000 * 109.47365 * 60.00045 * 1 2 3 22 22 H 1.09005 * 109.47398 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47060 * 299.99416 * 4 2 1 24 24 H 1.09000 * 109.47281 * 59.99583 * 4 2 1 25 25 H 1.09000 * 109.47285 * 179.97438 * 5 4 2 26 26 H 1.08998 * 109.46934 * 299.99611 * 5 4 2 27 27 H 1.09004 * 109.47263 * 60.00674 * 6 5 4 28 28 H 1.09004 * 109.46787 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.47283 * 300.00209 * 7 6 5 30 30 H 1.08999 * 109.47116 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.46992 * 60.00258 * 11 10 8 32 32 H 1.08998 * 109.47361 * 299.99953 * 11 10 8 33 33 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0794 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7212 1.2492 9 1 1.6767 -1.7489 1.2492 10 16 1.4353 0.1339 2.7303 11 6 2.0035 -0.9366 4.0801 12 6 1.5726 -0.3518 5.4004 13 1 1.0132 0.5718 5.4251 14 6 1.8934 -0.9951 6.5770 15 7 2.5750 -2.1194 6.5468 16 14 1.3598 -0.2698 8.2137 17 1 2.4149 0.6459 8.7168 18 1 0.0944 0.4857 8.0312 19 1 1.1458 -1.3646 9.1939 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6767 -1.7489 -1.2493 24 1 1.6766 -0.2074 -2.1393 25 1 3.9333 -1.2359 -2.1388 26 1 3.9337 0.3057 -1.2488 27 1 3.7158 -2.4709 0.0000 28 1 5.1695 -1.4433 0.0007 29 1 3.9332 0.3055 1.2497 30 1 3.9321 -1.2364 2.1394 31 1 3.0908 -1.0093 4.0529 32 1 1.5699 -1.9297 3.9634 33 1 2.8010 -2.5718 7.3746 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600555189.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:49 Heat of formation + Delta-G solvation = -45.911791 kcal Electronic energy + Delta-G solvation = -12516.586707 eV Core-core repulsion = 10473.598443 eV Total energy + Delta-G solvation = -2042.988263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.41230 -33.13292 -32.41032 -30.63459 -28.42136 -26.14632 -23.07398 -22.45887 -21.02266 -19.58916 -16.55572 -15.64866 -14.76244 -14.44324 -14.32762 -14.15477 -13.50588 -13.14990 -12.45348 -12.40687 -12.05964 -11.93925 -11.67867 -11.29049 -11.12746 -10.88487 -10.75693 -10.64310 -10.49151 -10.25177 -9.98894 -9.60198 -9.35982 -8.64918 -8.57712 -6.57818 -6.15795 -4.19348 2.76148 3.28067 3.33548 3.39279 3.95947 4.38523 4.82828 4.89036 5.05233 5.21169 5.28318 5.36847 5.58281 5.63509 5.70180 5.73821 5.87437 5.93193 6.07110 6.17395 6.21994 6.27729 6.32400 6.44405 6.53836 6.61433 6.70319 7.17035 7.18916 7.78965 8.07188 8.82572 9.43255 10.95571 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.052219 B = 0.007160 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.075082 B = 3909.673529 C = 4277.137933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.068 4.068 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.113 4.113 8 C -0.048 4.048 9 H 0.074 0.926 10 S -0.310 6.310 11 C 0.091 3.909 12 C -0.510 4.510 13 H 0.066 0.934 14 C 0.064 3.936 15 N -0.894 5.894 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.271 1.271 19 H -0.285 1.285 20 H 0.072 0.928 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 1.569 -13.523 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.177 4.177 9 H 0.093 0.907 10 S -0.080 6.080 11 C -0.056 4.056 12 C -0.550 4.550 13 H 0.084 0.916 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.196 1.196 19 H -0.210 1.210 20 H 0.091 0.909 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.144 2.382 -13.310 13.522 hybrid contribution 0.510 -0.952 0.926 1.423 sum 0.654 1.430 -12.384 12.483 Atomic orbital electron populations 1.21880 0.94818 1.01897 1.01952 1.20910 0.95940 0.99361 0.92506 0.90855 1.21617 0.95464 1.00644 0.97199 1.21539 0.95778 1.00693 0.97595 1.21571 0.99952 0.99387 0.94705 1.21838 0.94137 1.01445 0.97844 1.23046 0.97530 1.01345 0.95761 0.90715 1.86483 1.76481 1.42749 1.02237 1.21017 0.98518 0.94599 0.91417 1.20715 1.36129 1.09090 0.89020 0.91574 1.24969 0.94880 0.94816 0.99286 1.69962 1.38686 1.16606 1.27979 0.86370 0.79212 0.78685 0.82500 1.20388 1.19576 1.21018 0.90905 0.93374 0.92969 0.92090 0.92068 0.92428 0.92058 0.92210 0.92150 0.91249 0.91362 0.94694 0.94960 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.96 37.15 0.33 -1.75 16 2 C -0.07 -0.98 2.25 -90.62 -0.20 -1.18 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 5 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 6 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 7 C -0.11 -1.85 5.11 -26.76 -0.14 -1.98 16 8 C -0.05 -0.84 2.15 -26.76 -0.06 -0.89 16 9 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 10 S -0.31 -6.83 19.60 -107.50 -2.11 -8.94 16 11 C 0.09 2.42 5.39 36.00 0.19 2.61 16 12 C -0.51 -14.67 9.13 -34.44 -0.31 -14.99 16 13 H 0.07 1.91 7.71 -52.49 -0.40 1.50 16 14 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 16 Si 0.91 21.69 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H 0.07 1.16 6.91 -51.93 -0.36 0.81 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.26 6.92 -51.93 -0.36 0.90 16 31 H 0.03 0.96 7.14 -51.92 -0.37 0.59 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 273.93 15.07 4.13 4.13 Total: -1.00 -29.03 273.93 -8.70 -37.73 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.70 Total: -2.86 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -0.74 Total: -21.09 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -6.83 SS G_CDS: -2.11 Total: -8.94 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.03 -8.70 -37.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600555189.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.178 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds