Wall clock time and date at job start Thu Apr 9 2020 11:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47398 * 2 1 4 4 C 1.53005 * 109.47158 * 240.00321 * 2 1 3 5 5 C 1.53005 * 109.47213 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47066 * 59.99392 * 5 4 2 7 7 C 1.52997 * 109.47415 * 299.99958 * 6 5 4 8 8 C 1.52997 * 109.47571 * 120.00093 * 2 1 3 9 9 H 1.08998 * 109.47021 * 59.99859 * 8 2 1 10 10 S 1.81403 * 109.46931 * 300.00274 * 8 2 1 11 11 C 1.81397 * 103.00144 * 174.99612 * 10 8 2 12 12 C 1.50694 * 109.47289 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 H 1.09000 * 109.47231 * 299.99803 * 1 2 3 21 21 H 1.09000 * 109.47365 * 60.00045 * 1 2 3 22 22 H 1.09005 * 109.47398 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47060 * 299.99416 * 4 2 1 24 24 H 1.09000 * 109.47281 * 59.99583 * 4 2 1 25 25 H 1.09000 * 109.47285 * 179.97438 * 5 4 2 26 26 H 1.08998 * 109.46934 * 299.99611 * 5 4 2 27 27 H 1.09004 * 109.47263 * 60.00674 * 6 5 4 28 28 H 1.09004 * 109.46787 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.47283 * 300.00209 * 7 6 5 30 30 H 1.08999 * 109.47116 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.46992 * 60.00258 * 11 10 8 32 32 H 1.08998 * 109.47361 * 299.99953 * 11 10 8 33 33 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0794 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7212 1.2492 9 1 1.6767 -1.7489 1.2492 10 16 1.4353 0.1339 2.7303 11 6 2.0035 -0.9366 4.0801 12 6 1.5726 -0.3518 5.4004 13 1 1.0132 0.5718 5.4251 14 6 1.8934 -0.9951 6.5770 15 7 2.5750 -2.1194 6.5468 16 14 1.3598 -0.2698 8.2137 17 1 2.4149 0.6459 8.7168 18 1 0.0944 0.4857 8.0312 19 1 1.1458 -1.3646 9.1939 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6767 -1.7489 -1.2493 24 1 1.6766 -0.2074 -2.1393 25 1 3.9333 -1.2359 -2.1388 26 1 3.9337 0.3057 -1.2488 27 1 3.7158 -2.4709 0.0000 28 1 5.1695 -1.4433 0.0007 29 1 3.9332 0.3055 1.2497 30 1 3.9321 -1.2364 2.1394 31 1 3.0908 -1.0093 4.0529 32 1 1.5699 -1.9297 3.9634 33 1 2.8010 -2.5718 7.3746 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600555189.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:49 Heat of formation + Delta-G solvation = -60.934072 kcal Electronic energy + Delta-G solvation = -12517.238122 eV Core-core repulsion = 10473.598443 eV Total energy + Delta-G solvation = -2043.639678 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.57521 -35.32152 -33.56444 -31.84026 -30.58573 -27.29710 -25.22385 -23.64677 -22.18582 -20.75747 -18.68618 -17.34285 -16.59147 -15.74043 -15.52923 -15.42470 -14.89094 -14.56927 -14.46749 -14.15517 -13.66403 -13.33192 -12.87532 -12.76658 -12.54012 -12.44898 -12.34179 -12.02154 -11.83007 -11.60620 -11.41253 -11.31264 -10.89478 -10.75372 -10.39175 -8.42013 -8.34861 -6.48417 1.07952 1.38047 1.39578 1.52288 2.06641 2.35274 2.99153 3.63206 3.72435 4.00124 4.19179 4.21750 4.38897 4.48492 4.54347 4.56273 4.80034 4.87185 4.92803 4.92890 5.01060 5.06808 5.17637 5.18881 5.27657 5.31958 5.36930 5.46950 5.55153 5.57052 5.88495 6.59187 7.19559 8.77288 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.052219 B = 0.007160 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.075082 B = 3909.673529 C = 4277.137933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 H 0.072 0.928 4 C -0.105 4.105 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.112 4.112 8 C -0.037 4.037 9 H 0.066 0.934 10 S -0.318 6.318 11 C 0.096 3.904 12 C -0.538 4.538 13 H 0.061 0.939 14 C 0.013 3.987 15 N -0.926 5.926 16 Si 0.978 3.022 17 H -0.268 1.268 18 H -0.265 1.265 19 H -0.274 1.274 20 H 0.046 0.954 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.012 0.988 32 H 0.005 0.995 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 2.178 -15.018 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 H 0.090 0.910 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.166 4.166 9 H 0.084 0.916 10 S -0.088 6.088 11 C -0.051 4.051 12 C -0.576 4.576 13 H 0.079 0.921 14 C -0.188 4.188 15 N -0.565 5.565 16 Si 0.801 3.199 17 H -0.193 1.193 18 H -0.190 1.190 19 H -0.199 1.199 20 H 0.065 0.935 21 H 0.095 0.905 22 H 0.071 0.929 23 H 0.082 0.918 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.023 0.977 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.025 2.994 -14.812 15.112 hybrid contribution 0.564 -1.162 1.301 1.833 sum 0.589 1.831 -13.511 13.648 Atomic orbital electron populations 1.21858 0.94470 1.01997 1.02069 1.20960 0.96255 0.99206 0.91975 0.90994 1.21613 0.95811 1.00677 0.96248 1.21546 0.95312 1.01041 0.97327 1.21559 1.00807 0.99082 0.93691 1.21789 0.93240 1.01499 0.98572 1.23244 0.98339 1.00636 0.94373 0.91555 1.86290 1.76776 1.42490 1.03245 1.20664 0.96849 0.94249 0.93366 1.21032 1.36778 1.09288 0.90508 0.92115 1.25957 0.94475 0.95041 1.03309 1.70072 1.39306 1.17778 1.29357 0.85253 0.79057 0.78189 0.77412 1.19302 1.18960 1.19906 0.93455 0.90535 0.92901 0.91816 0.89420 0.89792 0.91572 0.92202 0.90793 0.91384 0.94617 0.96981 0.97671 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 8.96 71.98 0.64 -3.22 16 2 C -0.06 -1.74 2.25 -10.80 -0.02 -1.76 16 3 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 4 C -0.10 -2.10 5.20 30.60 0.16 -1.94 16 5 C -0.11 -2.20 5.92 30.60 0.18 -2.02 16 6 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 7 C -0.11 -3.67 5.11 30.58 0.16 -3.51 16 8 C -0.04 -1.30 2.15 30.58 0.07 -1.24 16 9 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 10 S -0.32 -14.49 19.60 -56.49 -1.11 -15.60 16 11 C 0.10 5.37 5.39 71.23 0.38 5.75 16 12 C -0.54 -31.94 9.13 25.60 0.23 -31.70 16 13 H 0.06 3.59 7.71 -2.91 -0.02 3.57 16 14 C 0.01 0.74 5.46 84.66 0.46 1.20 16 15 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 16 Si 0.98 44.76 29.54 68.60 2.03 46.78 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 H 0.05 1.48 6.91 -2.39 -0.02 1.47 16 21 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 1.38 6.92 -2.39 -0.02 1.36 16 31 H 0.01 0.71 7.14 -2.39 -0.02 0.69 16 32 H 0.00 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -64.27 273.93 4.69 -59.58 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.04 Total: 5.92 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 2.44 Total: -40.97 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.28 Total: -55.70 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: -14.49 SS G_CDS: -1.11 Total: -15.60 kcal Total: -64.27 4.69 -59.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600555189.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.357 kcal (2) G-P(sol) polarization free energy of solvation -64.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds