Wall clock time and date at job start Thu Apr 9 2020 11:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42906 * 109.46863 * 2 1 4 4 C 1.42900 * 113.99687 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46612 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.50108 * 55.06605 * 5 4 3 7 7 C 1.53049 * 109.49391 * 175.15759 * 5 4 3 8 8 C 1.53043 * 109.53649 * 181.31360 * 7 5 4 9 9 C 1.53190 * 109.31278 * 298.63905 * 8 7 5 10 10 N 1.46915 * 108.77744 * 54.63736 * 9 8 7 11 11 C 1.36938 * 120.63492 * 126.37128 * 10 9 8 12 12 H 1.08010 * 119.99400 * 331.83846 * 11 10 9 13 13 C 1.38807 * 120.00426 * 151.84340 * 11 10 9 14 14 N 1.31618 * 120.00160 * 343.07100 * 13 11 10 15 15 Si 1.86804 * 119.99987 * 163.07335 * 13 11 10 16 16 H 1.48493 * 109.47347 * 89.99984 * 15 13 11 17 17 H 1.48506 * 109.46802 * 210.00146 * 15 13 11 18 18 H 1.48499 * 109.46874 * 329.99755 * 15 13 11 19 19 C 1.46928 * 118.73863 * 306.38710 * 10 9 8 20 20 H 1.09002 * 109.47240 * 300.00302 * 1 2 3 21 21 H 1.09005 * 109.46890 * 60.00503 * 1 2 3 22 22 H 1.08992 * 109.46796 * 179.97438 * 1 2 3 23 23 H 1.08989 * 109.47055 * 239.99931 * 2 1 3 24 24 H 1.08996 * 109.46755 * 119.99624 * 2 1 3 25 25 H 1.09000 * 109.47210 * 59.99907 * 4 3 2 26 26 H 1.09002 * 109.46821 * 299.99223 * 4 3 2 27 27 H 1.08990 * 109.46270 * 301.33994 * 7 5 4 28 28 H 1.09002 * 109.45892 * 61.29927 * 7 5 4 29 29 H 1.09002 * 109.49230 * 178.68350 * 8 7 5 30 30 H 1.09005 * 109.52098 * 58.60776 * 8 7 5 31 31 H 1.09000 * 109.58693 * 294.83961 * 9 8 7 32 32 H 1.09006 * 109.69690 * 174.49233 * 9 8 7 33 33 H 0.96996 * 120.00545 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.59020 * 293.82337 * 19 10 9 35 35 H 1.09001 * 109.58812 * 173.39593 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9384 -0.0012 6 1 3.3509 3.4419 0.8412 7 6 5.3460 3.0614 0.1200 8 6 5.7390 4.5401 0.1525 9 6 5.3023 5.2092 -1.1546 10 7 3.8660 4.9708 -1.3511 11 6 3.0084 6.0161 -1.5681 12 1 3.2359 6.9932 -1.1679 13 6 1.8469 5.8200 -2.3024 14 7 1.7211 4.7531 -3.0627 15 14 0.4621 7.0705 -2.2114 16 1 0.6565 8.1017 -3.2621 17 1 -0.8381 6.3855 -2.4245 18 1 0.4672 7.7183 -0.8751 19 6 3.3671 3.5894 -1.3100 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3632 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8333 0.9768 -0.8908 26 1 3.8340 0.9766 0.8893 27 1 5.6774 2.5773 1.0385 28 1 5.8186 2.5788 -0.7355 29 1 6.8200 4.6269 0.2623 30 1 5.2474 5.0293 0.9935 31 1 5.8610 4.7828 -1.9878 32 1 5.4905 6.2815 -1.0992 33 1 0.9093 4.6158 -3.5755 34 1 3.7678 3.0308 -2.1558 35 1 2.2780 3.5928 -1.3546 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609614015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:58 Heat of formation + Delta-G solvation = -62.868132 kcal Electronic energy + Delta-G solvation = -14999.616074 eV Core-core repulsion = 12610.858319 eV Total energy + Delta-G solvation = -2388.757754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77289 -38.32872 -35.12420 -33.32804 -31.90634 -31.24118 -27.26398 -26.51813 -23.94177 -23.49305 -22.35816 -20.60774 -18.71377 -17.48439 -17.12370 -16.70062 -15.87406 -15.52373 -15.26707 -14.91867 -14.33625 -14.09869 -13.97266 -13.71559 -13.20701 -12.91262 -12.80127 -12.53744 -12.44935 -12.21474 -12.07479 -11.91425 -11.68699 -11.52588 -11.15549 -11.04630 -10.53859 -10.42463 -8.65839 -7.85555 -5.31897 1.43619 1.46326 1.55866 2.51112 2.85300 3.28058 3.70048 4.08601 4.09611 4.18863 4.20659 4.32667 4.38674 4.47093 4.50102 4.68047 4.80698 4.83108 4.86461 4.91675 5.03282 5.04024 5.13596 5.26009 5.28432 5.39739 5.44063 5.58887 5.69675 5.84210 6.41492 6.44617 7.16119 7.89140 8.40382 9.19934 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.012181 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.630518 B = 2298.202948 C = 3435.969122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.416 6.416 4 C 0.078 3.922 5 C -0.105 4.105 6 H 0.053 0.947 7 C -0.096 4.096 8 C -0.123 4.123 9 C 0.135 3.865 10 N -0.615 5.615 11 C -0.268 4.268 12 H 0.065 0.935 13 C -0.051 4.051 14 N -0.932 5.932 15 Si 0.966 3.034 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.271 1.271 19 C 0.194 3.806 20 H 0.057 0.943 21 H 0.042 0.958 22 H 0.098 0.902 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.013 0.987 32 H 0.051 0.949 33 H 0.248 0.752 34 H -0.013 1.013 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -8.753 7.888 12.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.337 6.337 4 C 0.002 3.998 5 C -0.126 4.126 6 H 0.071 0.929 7 C -0.134 4.134 8 C -0.162 4.162 9 C 0.010 3.990 10 N -0.338 5.338 11 C -0.398 4.398 12 H 0.083 0.917 13 C -0.247 4.247 14 N -0.578 5.578 15 Si 0.793 3.207 16 H -0.207 1.207 17 H -0.219 1.219 18 H -0.196 1.196 19 C 0.068 3.932 20 H 0.076 0.924 21 H 0.062 0.938 22 H 0.117 0.883 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.005 0.995 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.626 -8.615 7.782 12.163 hybrid contribution -0.805 0.461 -0.531 1.069 sum 2.822 -8.154 7.251 11.271 Atomic orbital electron populations 1.21764 0.93504 1.03306 1.02057 1.22646 0.96133 0.83164 1.00754 1.87978 1.22271 1.27919 1.95484 1.22497 0.80648 0.96350 1.00336 1.21697 0.97239 0.94244 0.99389 0.92858 1.21358 0.92977 0.96907 1.02136 1.21885 1.00970 0.95661 0.97649 1.21133 0.84253 0.98308 0.95325 1.44384 1.02840 1.03029 1.83586 1.19508 1.02243 0.91621 1.26469 0.91728 1.25828 1.02556 0.99800 0.96477 1.70196 1.27203 1.30753 1.29614 0.85307 0.78747 0.78477 0.78132 1.20743 1.21898 1.19554 1.20461 0.98311 0.83090 0.91310 0.92403 0.93845 0.88326 0.93265 0.91582 0.93698 0.91126 0.89828 0.92261 0.89329 0.92911 0.96932 0.93013 0.94256 0.99509 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 10.28 71.98 0.74 -3.07 16 2 C 0.05 1.37 6.66 71.98 0.48 1.85 16 3 O -0.42 -15.94 9.99 -148.98 -1.49 -17.42 16 4 C 0.08 2.67 5.32 71.98 0.38 3.05 16 5 C -0.11 -4.22 2.58 -10.71 -0.03 -4.25 16 6 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 7 C -0.10 -3.09 5.17 30.63 0.16 -2.93 16 8 C -0.12 -4.13 6.08 30.67 0.19 -3.94 16 9 C 0.13 5.86 6.52 86.36 0.56 6.42 16 10 N -0.62 -33.08 2.99 -699.11 -2.09 -35.17 16 11 C -0.27 -15.71 9.58 84.03 0.81 -14.91 16 12 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 13 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 14 N -0.93 -58.44 11.20 21.65 0.24 -58.20 16 15 Si 0.97 47.25 29.59 68.60 2.03 49.27 16 16 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 17 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 19 C 0.19 10.11 4.42 86.36 0.38 10.49 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 2.19 7.93 -2.38 -0.02 2.17 16 33 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H 0.05 3.11 5.90 -2.39 -0.01 3.09 16 Total: -1.00 -69.49 280.63 3.80 -65.69 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.02 Total: 5.73 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 4.09 Total: -9.89 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -1.85 Total: -93.37 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -1.49 Total: -17.42 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -69.49 3.80 -65.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609614015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.818 kcal (2) G-P(sol) polarization free energy of solvation -69.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds