Wall clock time and date at job start Thu Apr 9 2020 11:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.46701 * 2 1 4 4 C 1.42904 * 113.99920 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46825 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46800 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47000 * 180.02562 * 6 5 4 8 8 C 1.36937 * 120.00204 * 269.99959 * 7 6 5 9 9 H 1.08003 * 119.99955 * 141.41279 * 8 7 6 10 10 C 1.38811 * 119.99840 * 321.42610 * 8 7 6 11 11 N 1.31619 * 119.99914 * 157.77450 * 10 8 7 12 12 Si 1.86797 * 119.99823 * 337.77040 * 10 8 7 13 13 H 1.48494 * 109.47472 * 95.68500 * 12 10 8 14 14 H 1.48510 * 109.47018 * 215.68668 * 12 10 8 15 15 H 1.48501 * 109.46998 * 335.67978 * 12 10 8 16 16 C 1.46505 * 119.99913 * 89.99908 * 7 6 5 17 17 C 1.53006 * 117.49670 * 183.19169 * 16 7 6 18 18 C 1.52998 * 117.49913 * 114.53382 * 16 7 6 19 19 H 1.08993 * 109.47083 * 60.00305 * 1 2 3 20 20 H 1.09006 * 109.46323 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47459 * 299.99223 * 1 2 3 22 22 H 1.08998 * 109.47459 * 240.00777 * 2 1 3 23 23 H 1.09000 * 109.47419 * 119.99896 * 2 1 3 24 24 H 1.08998 * 109.47071 * 60.00233 * 4 3 2 25 25 H 1.09000 * 109.46794 * 300.00163 * 4 3 2 26 26 H 1.08998 * 109.47166 * 60.00217 * 5 4 3 27 27 H 1.08994 * 109.47211 * 299.99988 * 5 4 3 28 28 H 1.08998 * 109.47165 * 60.00117 * 6 5 4 29 29 H 1.09000 * 109.46725 * 300.00033 * 6 5 4 30 30 H 0.96999 * 119.99752 * 179.97438 * 11 10 8 31 31 H 1.09001 * 115.55232 * 328.85904 * 16 7 6 32 32 H 1.08993 * 117.49982 * 0.02562 * 17 16 7 33 33 H 1.09000 * 117.49376 * 145.01943 * 17 16 7 34 34 H 1.09001 * 117.50045 * 214.98064 * 18 16 7 35 35 H 1.09006 * 117.49626 * 359.97234 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.8251 2.9386 0.0012 6 6 5.3504 3.0595 0.0012 7 7 5.7281 4.4750 0.0023 8 6 5.9045 5.1376 -1.1830 9 1 5.5736 6.1607 -1.2842 10 6 6.5083 4.4942 -2.2546 11 7 6.3008 4.9231 -3.4815 12 14 7.6153 3.0197 -1.9552 13 1 6.8313 1.7698 -2.1228 14 1 8.7356 3.0357 -2.9301 15 1 8.1596 3.0814 -0.5749 16 6 5.9170 5.1816 1.2717 17 6 6.2375 6.6764 1.2072 18 6 7.3267 5.6759 1.6021 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0278 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.8340 0.9767 -0.8892 25 1 3.8332 0.9769 0.8908 26 1 3.4220 3.4218 0.8911 27 1 3.4227 3.4223 -0.8888 28 1 5.7532 2.5764 -0.8890 29 1 5.7532 2.5756 0.8909 30 1 6.7231 4.4737 -4.2303 31 1 5.2983 4.8349 2.0995 32 1 6.3074 7.1340 0.2205 33 1 5.8301 7.3127 1.9928 34 1 7.6355 5.6546 2.6472 35 1 8.1137 5.4749 0.8752 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610212967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:03 Heat of formation + Delta-G solvation = -6.659856 kcal Electronic energy + Delta-G solvation = -14506.587200 eV Core-core repulsion = 12120.266820 eV Total energy + Delta-G solvation = -2386.320381 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.95755 -37.17749 -34.16397 -32.30872 -31.15926 -29.50856 -25.15545 -23.62796 -22.68381 -21.59194 -20.94360 -19.59590 -16.79051 -16.14183 -15.95563 -15.39631 -15.28851 -14.13112 -13.97289 -13.65192 -12.82406 -12.56951 -12.36913 -12.33730 -11.95887 -11.60983 -11.32912 -10.90567 -10.83270 -10.70139 -10.51136 -10.30830 -9.93197 -9.70817 -9.44657 -9.39230 -9.33331 -8.51412 -6.72285 -6.02540 -3.44893 3.27249 3.44136 3.50966 3.87493 4.49234 4.79959 4.91805 5.05492 5.21415 5.28295 5.37945 5.47897 5.63042 5.65915 5.81377 5.89559 5.91463 5.97989 6.03517 6.08712 6.11071 6.32970 6.38253 6.44342 6.52780 6.83319 6.93939 7.04307 7.13358 7.48391 8.04380 8.39389 8.97416 9.68356 10.09024 11.12396 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.008633 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.004241 B = 3242.740186 C = 3816.839646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.389 6.389 4 C 0.064 3.936 5 C -0.132 4.132 6 C 0.145 3.855 7 N -0.573 5.573 8 C -0.269 4.269 9 H 0.083 0.917 10 C 0.039 3.961 11 N -0.896 5.896 12 Si 0.874 3.126 13 H -0.286 1.286 14 H -0.300 1.300 15 H -0.266 1.266 16 C 0.120 3.880 17 C -0.188 4.188 18 C -0.224 4.224 19 H 0.063 0.937 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 -7.815 8.484 12.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.309 6.309 4 C -0.013 4.013 5 C -0.172 4.172 6 C 0.019 3.981 7 N -0.291 5.291 8 C -0.397 4.397 9 H 0.100 0.900 10 C -0.162 4.162 11 N -0.537 5.537 12 Si 0.703 3.297 13 H -0.214 1.214 14 H -0.228 1.228 15 H -0.191 1.191 16 C 0.011 3.989 17 C -0.226 4.226 18 C -0.265 4.265 19 H 0.082 0.918 20 H 0.085 0.915 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.520 -7.671 8.268 12.556 hybrid contribution 0.929 -1.077 -0.029 1.423 sum -4.591 -8.748 8.239 12.864 Atomic orbital electron populations 1.21731 0.94113 1.01786 1.03108 1.22410 0.95361 0.84713 0.99701 1.87918 1.22092 1.25523 1.95363 1.22592 0.80185 0.99182 0.99388 1.22133 0.98962 0.92649 1.03430 1.21040 0.91717 0.85995 0.99347 1.43638 1.77456 1.06796 1.01231 1.18735 1.34419 0.99703 0.86835 0.89970 1.25497 0.97544 0.97946 0.95242 1.69866 1.43458 1.42388 0.97940 0.86969 0.81515 0.82970 0.78199 1.21356 1.22846 1.19072 1.21166 0.94852 0.93184 0.89690 1.23062 1.03951 0.93021 1.02557 1.23385 0.95563 1.07806 0.99753 0.91837 0.91496 0.91984 0.93703 0.93855 0.93659 0.94013 0.92024 0.90401 0.92712 0.94029 0.92637 0.89072 0.87892 0.90474 0.90842 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.70 6.66 37.16 0.25 0.95 16 3 O -0.39 -6.57 10.34 -35.23 -0.36 -6.93 16 4 C 0.06 1.08 5.94 37.16 0.22 1.30 16 5 C -0.13 -2.59 5.91 -26.73 -0.16 -2.75 16 6 C 0.14 3.12 4.55 -4.04 -0.02 3.10 16 7 N -0.57 -13.63 2.39 -165.65 -0.40 -14.03 16 8 C -0.27 -7.42 8.95 -15.06 -0.13 -7.56 16 9 H 0.08 2.46 6.86 -52.48 -0.36 2.10 16 10 C 0.04 1.11 5.30 -17.43 -0.09 1.02 16 11 N -0.90 -27.20 13.97 55.49 0.78 -26.42 16 12 Si 0.87 22.07 25.08 -169.99 -4.26 17.81 16 13 H -0.29 -6.96 6.69 56.52 0.38 -6.58 16 14 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.12 2.46 6.56 -67.93 -0.45 2.01 16 17 C -0.19 -3.65 9.80 -26.69 -0.26 -3.91 16 18 C -0.22 -4.35 10.36 -26.69 -0.28 -4.62 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 20 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.06 1.29 3.40 -51.93 -0.18 1.11 16 29 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.10 2.25 6.44 -51.93 -0.33 1.92 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 285.93 15.07 4.31 4.31 Total: -1.00 -30.07 285.93 -6.42 -36.49 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.95 Total: 0.44 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.54 Total: -11.67 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.38 Total: -40.45 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.36 Total: -6.93 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.26 Total: 17.81 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.07 -6.42 -36.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610212967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.833 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds