Wall clock time and date at job start Thu Apr 9 2020 11:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.46701 * 2 1 4 4 C 1.42904 * 113.99920 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46825 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46800 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47000 * 180.02562 * 6 5 4 8 8 C 1.36937 * 120.00204 * 269.99959 * 7 6 5 9 9 H 1.08003 * 119.99955 * 141.41279 * 8 7 6 10 10 C 1.38811 * 119.99840 * 321.42610 * 8 7 6 11 11 N 1.31619 * 119.99914 * 157.77450 * 10 8 7 12 12 Si 1.86797 * 119.99823 * 337.77040 * 10 8 7 13 13 H 1.48494 * 109.47472 * 95.68500 * 12 10 8 14 14 H 1.48510 * 109.47018 * 215.68668 * 12 10 8 15 15 H 1.48501 * 109.46998 * 335.67978 * 12 10 8 16 16 C 1.46505 * 119.99913 * 89.99908 * 7 6 5 17 17 C 1.53006 * 117.49670 * 183.19169 * 16 7 6 18 18 C 1.52998 * 117.49913 * 114.53382 * 16 7 6 19 19 H 1.08993 * 109.47083 * 60.00305 * 1 2 3 20 20 H 1.09006 * 109.46323 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47459 * 299.99223 * 1 2 3 22 22 H 1.08998 * 109.47459 * 240.00777 * 2 1 3 23 23 H 1.09000 * 109.47419 * 119.99896 * 2 1 3 24 24 H 1.08998 * 109.47071 * 60.00233 * 4 3 2 25 25 H 1.09000 * 109.46794 * 300.00163 * 4 3 2 26 26 H 1.08998 * 109.47166 * 60.00217 * 5 4 3 27 27 H 1.08994 * 109.47211 * 299.99988 * 5 4 3 28 28 H 1.08998 * 109.47165 * 60.00117 * 6 5 4 29 29 H 1.09000 * 109.46725 * 300.00033 * 6 5 4 30 30 H 0.96999 * 119.99752 * 179.97438 * 11 10 8 31 31 H 1.09001 * 115.55232 * 328.85904 * 16 7 6 32 32 H 1.08993 * 117.49982 * 0.02562 * 17 16 7 33 33 H 1.09000 * 117.49376 * 145.01943 * 17 16 7 34 34 H 1.09001 * 117.50045 * 214.98064 * 18 16 7 35 35 H 1.09006 * 117.49626 * 359.97234 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.8251 2.9386 0.0012 6 6 5.3504 3.0595 0.0012 7 7 5.7281 4.4750 0.0023 8 6 5.9045 5.1376 -1.1830 9 1 5.5736 6.1607 -1.2842 10 6 6.5083 4.4942 -2.2546 11 7 6.3008 4.9231 -3.4815 12 14 7.6153 3.0197 -1.9552 13 1 6.8313 1.7698 -2.1228 14 1 8.7356 3.0357 -2.9301 15 1 8.1596 3.0814 -0.5749 16 6 5.9170 5.1816 1.2717 17 6 6.2375 6.6764 1.2072 18 6 7.3267 5.6759 1.6021 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0278 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 1.8934 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.8340 0.9767 -0.8892 25 1 3.8332 0.9769 0.8908 26 1 3.4220 3.4218 0.8911 27 1 3.4227 3.4223 -0.8888 28 1 5.7532 2.5764 -0.8890 29 1 5.7532 2.5756 0.8909 30 1 6.7231 4.4737 -4.2303 31 1 5.2983 4.8349 2.0995 32 1 6.3074 7.1340 0.2205 33 1 5.8301 7.3127 1.9928 34 1 7.6355 5.6546 2.6472 35 1 8.1137 5.4749 0.8752 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610212967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:02 Heat of formation + Delta-G solvation = -25.597580 kcal Electronic energy + Delta-G solvation = -14507.408402 eV Core-core repulsion = 12120.266820 eV Total energy + Delta-G solvation = -2387.141582 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.34230 -38.72926 -35.79666 -34.16642 -32.56717 -31.00392 -26.97589 -25.35165 -23.66262 -23.14808 -22.48205 -21.41120 -18.54839 -17.54939 -17.45896 -17.00982 -16.96329 -15.58751 -15.38747 -15.20184 -14.57658 -14.15066 -13.98605 -13.83786 -13.23488 -13.05347 -12.72547 -12.50952 -12.40258 -12.19569 -12.03216 -11.89342 -11.72513 -11.49466 -11.26032 -10.96352 -10.62703 -10.52668 -8.64403 -8.22072 -5.61028 1.26224 1.38389 1.50220 2.39189 2.65706 3.03500 3.25248 3.35434 4.02499 4.17255 4.17857 4.28924 4.38287 4.41521 4.41837 4.48573 4.49666 4.55845 4.65577 4.72585 4.92419 4.94524 5.02436 5.03438 5.23195 5.25861 5.31749 5.42307 5.54326 5.94322 6.19283 6.31084 6.98521 7.61973 8.02689 8.97291 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.008633 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.004241 B = 3242.740186 C = 3816.839646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.415 6.415 4 C 0.069 3.931 5 C -0.121 4.121 6 C 0.140 3.860 7 N -0.588 5.588 8 C -0.252 4.252 9 H 0.043 0.957 10 C -0.020 4.020 11 N -0.948 5.948 12 Si 0.938 3.062 13 H -0.270 1.270 14 H -0.309 1.309 15 H -0.256 1.256 16 C 0.102 3.898 17 C -0.188 4.188 18 C -0.210 4.210 19 H 0.052 0.948 20 H 0.094 0.906 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.263 0.737 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.497 -9.741 11.233 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.335 6.335 4 C -0.008 4.008 5 C -0.161 4.161 6 C 0.016 3.984 7 N -0.307 5.307 8 C -0.382 4.382 9 H 0.061 0.939 10 C -0.216 4.216 11 N -0.591 5.591 12 Si 0.766 3.234 13 H -0.197 1.197 14 H -0.238 1.238 15 H -0.180 1.180 16 C -0.005 4.005 17 C -0.226 4.226 18 C -0.250 4.250 19 H 0.071 0.929 20 H 0.113 0.887 21 H 0.080 0.920 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.598 -9.612 11.062 15.688 hybrid contribution 0.854 -0.406 -0.821 1.252 sum -4.744 -10.018 10.240 15.091 Atomic orbital electron populations 1.21763 0.92670 1.03482 1.02581 1.22717 0.96615 0.82958 1.00837 1.87877 1.21787 1.28250 1.95580 1.22446 0.80755 0.96997 1.00558 1.21911 0.97612 0.94736 1.01807 1.21131 0.92832 0.84631 0.99853 1.43760 1.78094 1.07730 1.01159 1.18558 1.32754 0.98331 0.88558 0.93909 1.26107 0.99186 1.01462 0.94867 1.69997 1.45378 1.44849 0.98906 0.85924 0.79167 0.80246 0.78051 1.19715 1.23801 1.17953 1.21542 0.96418 0.93464 0.89116 1.23044 1.04565 0.93123 1.01912 1.23359 0.93971 1.06510 1.01176 0.92862 0.88690 0.92027 0.93279 0.91921 0.94157 0.91067 0.91142 0.94466 0.94747 0.90641 0.92835 0.85591 0.91549 0.86899 0.86867 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 10.28 71.98 0.74 -2.06 16 2 C 0.04 1.04 6.66 71.98 0.48 1.52 16 3 O -0.41 -13.27 10.34 -148.98 -1.54 -14.82 16 4 C 0.07 2.20 5.94 71.98 0.43 2.62 16 5 C -0.12 -4.60 5.91 30.60 0.18 -4.42 16 6 C 0.14 5.78 4.55 86.38 0.39 6.17 16 7 N -0.59 -27.52 2.39 -678.00 -1.62 -29.14 16 8 C -0.25 -14.34 8.95 84.03 0.75 -13.59 16 9 H 0.04 2.72 6.86 -2.91 -0.02 2.70 16 10 C -0.02 -1.16 5.30 84.86 0.45 -0.71 16 11 N -0.95 -59.93 13.97 21.65 0.30 -59.63 16 12 Si 0.94 46.15 25.08 68.60 1.72 47.87 16 13 H -0.27 -12.49 6.69 99.48 0.67 -11.83 16 14 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 15 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 16 C 0.10 3.93 6.56 44.99 0.30 4.22 16 17 C -0.19 -7.06 9.80 30.62 0.30 -6.76 16 18 C -0.21 -7.56 10.36 30.62 0.32 -7.24 16 19 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 20 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.56 3.40 -2.39 -0.01 1.56 16 29 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 30 H 0.26 15.75 8.31 -92.71 -0.77 14.97 16 31 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 32 H 0.07 2.99 6.44 -2.39 -0.02 2.97 16 33 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.11 3.20 8.14 -2.39 -0.02 3.19 16 35 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -67.24 285.93 4.19 -63.05 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.99 Total: 12.91 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 4.34 Total: -20.25 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -1.32 Total: -88.77 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.54 Total: -14.82 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.72 Total: 47.87 kcal Total: -67.24 4.19 -63.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610212967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.454 kcal (2) G-P(sol) polarization free energy of solvation -67.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds