Wall clock time and date at job start Thu Apr 9 2020 11:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00230 * 2 1 4 4 C 1.52999 * 109.46675 * 293.94999 * 3 2 1 5 5 C 1.50701 * 109.47185 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99812 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00107 * 180.02562 * 5 4 3 8 8 N 1.31505 * 119.99978 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99784 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47257 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47338 * 120.00277 * 9 7 5 12 12 H 1.48506 * 109.47124 * 240.00090 * 9 7 5 13 13 C 1.46903 * 110.99632 * 123.95063 * 2 1 3 14 14 C 1.53008 * 109.47002 * 164.00174 * 13 2 1 15 15 H 1.08996 * 109.46927 * 58.49606 * 14 13 2 16 16 O 1.42898 * 109.47009 * 298.49425 * 14 13 2 17 17 C 1.52997 * 109.46915 * 178.49554 * 14 13 2 18 18 C 1.53007 * 117.49689 * 248.74547 * 17 14 13 19 19 C 1.53005 * 117.49825 * 180.08879 * 17 14 13 20 20 H 1.09004 * 109.46989 * 302.03009 * 1 2 3 21 21 H 1.08998 * 109.46939 * 62.02623 * 1 2 3 22 22 H 1.08994 * 109.47121 * 182.02742 * 1 2 3 23 23 H 1.08999 * 109.47043 * 53.94763 * 3 2 1 24 24 H 1.09001 * 109.46838 * 173.95375 * 3 2 1 25 25 H 1.09001 * 109.47383 * 300.00184 * 4 3 2 26 26 H 1.09001 * 109.47181 * 60.00586 * 4 3 2 27 27 H 0.97005 * 120.00414 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47270 * 43.99981 * 13 2 1 29 29 H 1.09003 * 109.47181 * 284.00049 * 13 2 1 30 30 H 0.96698 * 113.99934 * 300.00631 * 16 14 13 31 31 H 1.08994 * 115.55391 * 34.41776 * 17 14 13 32 32 H 1.08999 * 117.49786 * 0.02562 * 18 17 14 33 33 H 1.09003 * 117.49597 * 145.02561 * 18 17 14 34 34 H 1.08996 * 117.49765 * 214.98077 * 19 17 14 35 35 H 1.09003 * 117.49535 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1722 3.4640 -1.3187 6 1 2.7209 3.8319 -0.4642 7 6 1.9664 4.2814 -2.4098 8 7 1.2978 3.8337 -3.4500 9 14 2.6371 6.0248 -2.4105 10 1 3.3459 6.2830 -1.1313 11 1 3.5828 6.1909 -3.5433 12 1 1.5153 6.9867 -2.5571 13 6 1.9954 -0.7659 1.1377 14 6 3.4728 -1.0842 0.8984 15 1 4.0282 -0.1553 0.7694 16 8 3.6031 -1.8845 -0.2782 17 6 4.0307 -1.8494 2.1001 18 6 5.0528 -1.1303 2.9829 19 6 5.5038 -2.2603 2.0540 20 1 -0.3633 0.5451 0.8713 21 1 -0.3633 0.4820 -0.9076 22 1 -0.3633 -1.0270 0.0364 23 1 1.5611 1.9274 0.8308 24 1 3.0798 1.3443 0.1082 25 1 2.0659 1.5013 -2.1492 26 1 0.5473 2.0845 -1.4266 27 1 1.1527 4.4088 -4.2175 28 1 1.4354 -1.6955 1.2401 29 1 1.8934 -0.1780 2.0499 30 1 3.1329 -2.7283 -0.2340 31 1 3.3335 -2.5297 2.5892 32 1 5.3274 -0.1120 2.7077 33 1 5.0283 -1.3379 4.0527 34 1 5.7757 -3.2108 2.5130 35 1 6.0753 -1.9858 1.1673 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610572823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:08 Heat of formation + Delta-G solvation = -31.730319 kcal Electronic energy + Delta-G solvation = -14412.412750 eV Core-core repulsion = 12025.005232 eV Total energy + Delta-G solvation = -2387.407518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.78198 -36.65209 -35.05997 -32.96562 -30.04391 -28.76144 -25.57068 -24.24602 -22.41640 -21.80932 -20.77719 -19.72669 -16.58811 -16.31732 -15.68733 -15.22228 -14.79754 -14.42033 -13.90437 -13.54531 -13.46171 -12.74167 -12.12578 -12.09592 -11.59086 -11.53016 -11.25346 -11.15549 -10.93459 -10.68565 -10.52667 -10.48372 -10.19812 -9.74869 -9.67412 -9.28969 -9.05095 -8.28930 -7.63922 -5.95227 -3.97360 3.33803 3.40954 3.44926 3.66379 4.26275 4.49845 4.68258 4.85239 4.87276 5.06049 5.24745 5.35930 5.40686 5.52951 5.57738 5.77139 5.80564 5.85133 5.98544 5.99471 6.07842 6.29371 6.31433 6.47958 6.55388 7.03693 7.54212 7.60850 7.82568 7.96114 7.99603 8.14988 8.48618 9.10214 9.65925 11.16331 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034674 B = 0.006560 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.333757 B = 4266.969366 C = 4690.140272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.534 5.534 3 C 0.063 3.937 4 C 0.028 3.972 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.027 3.973 14 C 0.142 3.858 15 H 0.100 0.900 16 O -0.540 6.540 17 C -0.192 4.192 18 C -0.176 4.176 19 C -0.166 4.166 20 H 0.016 0.984 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.017 0.983 24 H 0.059 0.941 25 H 0.026 0.974 26 H 0.016 0.984 27 H 0.259 0.741 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.366 0.634 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.158 -11.591 11.329 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.258 5.258 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.102 4.102 14 C 0.082 3.918 15 H 0.117 0.883 16 O -0.343 6.343 17 C -0.211 4.211 18 C -0.213 4.213 19 C -0.203 4.203 20 H 0.035 0.965 21 H 0.097 0.903 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.212 0.788 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.611 -11.248 10.528 15.824 hybrid contribution -0.370 0.943 1.012 1.431 sum 3.241 -10.306 11.540 15.808 Atomic orbital electron populations 1.22361 0.88021 1.00229 1.01364 1.62025 1.07175 1.15985 1.40569 1.22388 0.98546 0.85141 1.00337 1.19087 0.96829 0.93983 0.91055 1.21239 1.34954 0.97839 1.01912 0.92847 1.24987 0.95336 0.98429 0.95568 1.69983 1.40902 1.36283 1.06071 0.86555 0.78740 0.84829 0.77971 1.19816 1.20966 1.21064 1.22747 0.96075 0.98388 0.92992 1.21472 0.94466 0.93290 0.82563 0.88272 1.86670 1.75603 1.33711 1.38343 1.23113 0.92980 1.04144 1.00886 1.22964 1.03497 0.97890 0.96968 1.22844 0.96543 0.98915 1.02034 0.96549 0.90319 0.92784 0.96457 0.92213 0.95576 0.96541 0.93084 0.91504 0.94626 0.78841 0.88001 0.88487 0.88933 0.89075 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.27 60.07 0.56 1.05 16 2 N -0.53 -10.06 4.61 -242.91 -1.12 -11.18 16 3 C 0.06 1.38 4.75 -3.82 -0.02 1.36 16 4 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 5 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 6 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.46 13.28 55.43 0.74 -26.72 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.03 0.40 4.61 -3.82 -0.02 0.38 16 14 C 0.14 2.03 3.18 -26.73 -0.09 1.95 16 15 H 0.10 1.64 6.31 -51.93 -0.33 1.32 16 16 O -0.54 -8.32 13.14 -35.23 -0.46 -8.79 16 17 C -0.19 -2.16 5.36 -90.61 -0.49 -2.64 16 18 C -0.18 -1.85 10.18 -26.69 -0.27 -2.12 16 19 C -0.17 -1.75 10.16 -26.69 -0.27 -2.02 16 20 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 21 H 0.08 1.51 6.57 -51.93 -0.34 1.17 16 22 H 0.05 0.78 7.95 -51.93 -0.41 0.37 16 23 H 0.02 0.38 8.11 -51.93 -0.42 -0.04 16 24 H 0.06 1.31 6.38 -51.93 -0.33 0.98 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.02 0.46 6.60 -51.93 -0.34 0.12 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 28 H 0.07 0.85 7.87 -51.93 -0.41 0.45 16 29 H 0.04 0.52 8.05 -51.93 -0.42 0.11 16 30 H 0.37 4.21 9.05 45.56 0.41 4.62 16 31 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 32 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 288.67 15.07 4.35 4.35 Total: -1.00 -31.85 288.67 -7.74 -39.60 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.08 Total: 1.01 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.14 Total: -15.29 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.38 Total: -37.91 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.46 Total: -8.79 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.85 -7.74 -39.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610572823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.865 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds