Wall clock time and date at job start Thu Apr 9 2020 11:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 C 1.50700 * 109.47364 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99886 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99792 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00033 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00076 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46899 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47444 * 119.99510 * 9 7 5 12 12 H 1.48503 * 109.47300 * 239.99948 * 9 7 5 13 13 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 14 14 C 1.52997 * 109.47053 * 66.04702 * 13 2 1 15 15 H 1.09001 * 109.47321 * 305.00109 * 14 13 2 16 16 O 1.42901 * 109.47314 * 64.99816 * 14 13 2 17 17 C 1.53005 * 109.47055 * 184.99985 * 14 13 2 18 18 C 1.53001 * 117.49705 * 248.74629 * 17 14 13 19 19 C 1.53001 * 117.49885 * 180.08857 * 17 14 13 20 20 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 21 21 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 23 23 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 24 24 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 25 25 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 26 26 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 27 27 H 0.97005 * 119.99773 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46783 * 186.04686 * 13 2 1 29 29 H 1.09002 * 109.46955 * 306.04307 * 13 2 1 30 30 H 0.96704 * 113.99350 * 59.99870 * 16 14 13 31 31 H 1.09003 * 115.54833 * 34.41759 * 17 14 13 32 32 H 1.08994 * 117.49803 * 0.02562 * 18 17 14 33 33 H 1.09003 * 117.49767 * 145.02075 * 18 17 14 34 34 H 1.09001 * 117.49798 * 214.98138 * 19 17 14 35 35 H 1.08997 * 117.49802 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1720 3.4642 -1.3184 6 1 2.7200 3.8322 -0.4637 7 6 1.9661 4.2817 -2.4094 8 7 1.2983 3.8336 -3.4501 9 14 2.6367 6.0251 -2.4101 10 1 3.3456 6.2832 -1.1310 11 1 3.5824 6.1913 -3.5428 12 1 1.5148 6.9870 -2.5565 13 6 1.9955 -0.7660 1.1376 14 6 1.6315 -2.2426 0.9703 15 1 0.5533 -2.3389 0.8432 16 8 2.2956 -2.7696 -0.1800 17 6 2.0701 -3.0199 2.2131 18 6 3.2247 -4.0113 2.0553 19 6 1.7944 -4.5247 2.2389 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.5611 1.9274 0.8310 24 1 3.0797 1.3444 0.1083 25 1 2.0658 1.5016 -2.1491 26 1 0.5471 2.0845 -1.4264 27 1 1.1537 4.4086 -4.2178 28 1 3.0798 -0.6611 1.1756 29 1 1.5612 -0.3872 2.0628 30 1 3.2602 -2.7166 -0.1359 31 1 1.9968 -2.4786 3.1564 32 1 3.6722 -4.1093 1.0663 33 1 3.9109 -4.1224 2.8950 34 1 1.5402 -4.9734 3.1992 35 1 1.3003 -4.9608 1.3708 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610572824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:53:09 Heat of formation + Delta-G solvation = -30.171107 kcal Electronic energy + Delta-G solvation = -14291.419914 eV Core-core repulsion = 11904.080009 eV Total energy + Delta-G solvation = -2387.339905 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.05534 -36.73513 -34.80154 -33.00648 -30.32979 -28.35634 -26.19632 -24.24768 -22.58871 -21.68699 -20.41776 -19.78804 -16.83496 -16.36125 -15.92413 -15.29229 -14.85420 -14.47237 -14.22493 -13.53114 -13.16761 -12.59715 -12.36635 -12.10100 -11.64991 -11.44552 -11.21326 -11.07942 -11.01145 -10.84471 -10.60306 -10.55224 -10.14219 -9.90539 -9.79538 -9.23287 -9.06893 -8.30735 -7.64440 -5.96879 -3.99333 3.32608 3.39842 3.43729 3.61752 4.19554 4.48491 4.62581 4.80096 4.81286 4.85196 5.23044 5.30307 5.38877 5.49139 5.50588 5.72082 5.74780 5.91740 5.96969 5.99915 6.02322 6.16736 6.30116 6.47074 6.57692 6.99908 7.53675 7.58299 7.80403 7.86387 7.94555 8.12381 8.46646 9.08366 9.64157 11.14544 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.069914 B = 0.005171 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.396798 B = 5413.198871 C = 5498.413701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.533 5.533 3 C 0.063 3.937 4 C 0.027 3.973 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.026 3.974 14 C 0.140 3.860 15 H 0.101 0.899 16 O -0.546 6.546 17 C -0.191 4.191 18 C -0.178 4.178 19 C -0.172 4.172 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.016 0.984 23 H 0.018 0.982 24 H 0.058 0.942 25 H 0.025 0.975 26 H 0.017 0.983 27 H 0.260 0.740 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.370 0.630 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -13.249 11.086 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.560 4.560 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.102 4.102 14 C 0.080 3.920 15 H 0.118 0.882 16 O -0.351 6.351 17 C -0.210 4.210 18 C -0.215 4.215 19 C -0.209 4.209 20 H 0.097 0.903 21 H 0.075 0.925 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.217 0.783 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.813 -13.525 10.288 17.013 hybrid contribution 0.609 1.578 1.022 1.976 sum 1.422 -11.947 11.310 16.513 Atomic orbital electron populations 1.22421 0.88202 1.00564 1.01180 1.62022 1.07476 1.15650 1.40563 1.22362 0.98400 0.85209 1.00386 1.19097 0.96940 0.93979 0.90977 1.21237 1.35041 0.97832 1.01929 0.92814 1.24994 0.95317 0.98442 0.95573 1.69992 1.40870 1.36296 1.06037 0.86548 0.78740 0.84804 0.77961 1.19812 1.20971 1.21054 1.22767 1.00576 0.94083 0.92822 1.21435 0.97369 0.90286 0.82868 0.88163 1.86609 1.23275 1.83899 1.41301 1.23192 1.04512 0.92423 1.00898 1.22945 0.91472 1.03815 1.03241 1.22898 0.99127 0.95922 1.02935 0.90300 0.92451 0.96555 0.96412 0.92306 0.95648 0.96454 0.93066 0.90857 0.94893 0.78256 0.87521 0.88113 0.89044 0.89175 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.13 60.07 0.55 0.98 16 2 N -0.53 -10.03 4.71 -242.91 -1.14 -11.18 16 3 C 0.06 1.37 4.90 -3.83 -0.02 1.35 16 4 C 0.03 0.73 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 6 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.03 0.39 4.58 -3.82 -0.02 0.37 16 14 C 0.14 1.81 3.29 -26.73 -0.09 1.72 16 15 H 0.10 1.36 6.26 -51.93 -0.33 1.04 16 16 O -0.55 -7.72 12.44 -35.23 -0.44 -8.16 16 17 C -0.19 -1.98 5.71 -90.62 -0.52 -2.50 16 18 C -0.18 -1.63 9.74 -26.69 -0.26 -1.89 16 19 C -0.17 -1.63 10.19 -26.69 -0.27 -1.90 16 20 H 0.08 1.55 6.47 -51.93 -0.34 1.21 16 21 H 0.06 0.88 6.21 -51.93 -0.32 0.56 16 22 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.02 0.38 8.12 -51.92 -0.42 -0.04 16 24 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.48 6.55 -51.93 -0.34 0.14 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.07 1.05 7.93 -51.93 -0.41 0.64 16 29 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 30 H 0.37 4.21 7.56 45.56 0.34 4.56 16 31 H 0.11 1.04 8.11 -51.93 -0.42 0.62 16 32 H 0.10 0.91 6.37 -51.93 -0.33 0.58 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 284.70 15.07 4.29 4.29 Total: -1.00 -31.33 284.70 -7.80 -39.13 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.05 Total: 0.63 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.17 Total: -15.03 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.41 Total: -37.72 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.44 Total: -8.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.33 -7.80 -39.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610572824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.958 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds