Wall clock time and date at job start Thu Apr 9 2020 11:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86806 * 120.00067 * 2 1 4 4 H 1.48491 * 109.47335 * 270.00387 * 3 2 1 5 5 H 1.48502 * 109.46756 * 30.00298 * 3 2 1 6 6 H 1.48496 * 109.46943 * 149.99932 * 3 2 1 7 7 C 1.38753 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00112 * 180.02562 * 7 2 1 9 9 O 1.34925 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.34308 * 116.99811 * 180.02562 * 9 7 2 11 11 O 1.21213 * 120.00203 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99838 * 180.02562 * 10 9 7 13 13 H 1.08992 * 109.47284 * 300.00493 * 12 10 9 14 14 C 1.52996 * 109.46990 * 179.97438 * 12 10 9 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 14 12 17 17 C 1.53006 * 109.47127 * 300.00449 * 16 15 14 18 18 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.46764 * 299.99647 * 17 16 15 20 20 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 21 21 H 0.97000 * 120.00293 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47368 * 60.00232 * 14 12 10 23 23 H 1.09001 * 109.47372 * 300.00388 * 14 12 10 24 24 H 1.09002 * 109.47398 * 180.02562 * 15 14 12 25 25 H 1.09001 * 109.47194 * 300.00476 * 15 14 12 26 26 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 27 27 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 28 28 H 1.09002 * 109.47045 * 180.02562 * 20 17 16 29 29 H 1.09001 * 109.47375 * 59.99966 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5459 1.4402 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4330 -0.0001 12 6 1.3809 -4.8392 -0.0011 13 1 0.7578 -4.9299 0.8885 14 6 2.4346 -5.9485 -0.0016 15 6 1.7401 -7.3117 -0.0029 16 6 0.8664 -7.4378 -1.2525 17 6 -0.1874 -6.3285 -1.2520 18 1 -0.8096 -6.4180 -2.1425 19 9 -0.9871 -6.4455 -0.1101 20 6 0.5072 -4.9653 -1.2508 21 1 -0.4850 0.8400 0.0004 22 1 3.0575 -5.8585 0.8884 23 1 3.0575 -5.8576 -0.8916 24 1 2.4908 -8.1020 -0.0028 25 1 1.1170 -7.4029 0.8868 26 1 1.4893 -7.3467 -2.1422 27 1 0.3712 -8.4088 -1.2533 28 1 -0.2435 -4.1750 -1.2500 29 1 1.1303 -4.8741 -2.1405 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325915708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:39 Heat of formation + Delta-G solvation = -156.733573 kcal Electronic energy + Delta-G solvation = -14862.723527 eV Core-core repulsion = 12085.571922 eV Total energy + Delta-G solvation = -2777.151606 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.44168 -39.27484 -37.11680 -34.98269 -32.13958 -30.97755 -30.13062 -25.57310 -23.41156 -22.46714 -20.28096 -19.16640 -17.67481 -16.83455 -15.83066 -15.41261 -15.21988 -14.61755 -14.36923 -14.18788 -13.82562 -13.22579 -12.67127 -12.20563 -12.13270 -11.80029 -11.51394 -11.35080 -11.16587 -10.93513 -10.50812 -10.42651 -10.34887 -10.16100 -9.94004 -9.70365 -8.88626 -8.54702 -6.37841 -4.05715 3.12841 3.20387 3.26627 3.55624 3.96007 4.47512 4.64183 4.75639 4.88884 5.00920 5.13982 5.33828 5.36859 5.46797 5.58173 5.64106 5.78860 5.99194 6.05422 6.19461 6.28826 6.34276 6.54406 6.63817 6.90235 7.42837 7.99011 8.75489 9.11089 9.90881 10.80212 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.052549 B = 0.007696 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.709128 B = 3637.478573 C = 4007.487385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.383 4.383 8 H 0.094 0.906 9 O -0.213 6.213 10 C 0.401 3.599 11 O -0.557 6.557 12 C -0.069 4.069 13 H 0.098 0.902 14 C -0.101 4.101 15 C -0.120 4.120 16 C -0.146 4.146 17 C 0.094 3.906 18 H 0.083 0.917 19 F -0.212 7.212 20 C -0.137 4.137 21 H 0.269 0.731 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -11.670 -2.730 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.112 0.888 9 O -0.120 6.120 10 C 0.248 3.752 11 O -0.454 6.454 12 C -0.089 4.089 13 H 0.116 0.884 14 C -0.138 4.138 15 C -0.157 4.157 16 C -0.184 4.184 17 C 0.058 3.942 18 H 0.101 0.899 19 F -0.193 7.193 20 C -0.174 4.174 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.290 -11.477 -2.698 11.793 hybrid contribution 0.346 0.865 0.056 0.933 sum 0.056 -10.612 -2.642 10.936 Atomic orbital electron populations 1.69992 1.05969 1.27598 1.46694 1.25319 0.95786 0.98810 0.96275 0.85698 0.79066 0.79896 0.78680 1.19932 1.20347 1.19142 1.21218 0.92336 0.80018 1.52360 0.88812 1.83885 1.39345 1.13338 1.75444 1.23129 0.86581 0.87139 0.78378 1.90539 1.15772 1.88107 1.51025 1.20716 0.97240 0.90601 1.00300 0.88394 1.21381 0.96829 0.92050 1.03554 1.21528 0.98782 0.97418 0.97971 1.22157 0.97810 0.98297 1.00106 1.21563 0.90837 0.96298 0.85500 0.89916 1.92792 1.75588 1.97123 1.53838 1.22107 1.00075 0.96831 0.98435 0.92129 0.91032 0.91194 0.91430 0.91341 0.90142 0.91092 0.89016 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.68 13.67 55.48 0.76 -24.92 15 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 15 3 Si 0.94 21.59 29.55 -169.99 -5.02 16.56 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.38 -11.52 9.65 30.92 0.30 -11.23 15 8 H 0.09 2.84 6.86 -52.49 -0.36 2.48 15 9 O -0.21 -6.21 9.65 -20.71 -0.20 -6.41 15 10 C 0.40 10.10 7.20 36.01 0.26 10.35 15 11 O -0.56 -15.18 15.22 -19.05 -0.29 -15.47 15 12 C -0.07 -1.31 2.51 -91.77 -0.23 -1.54 15 13 H 0.10 1.85 7.80 -51.93 -0.41 1.44 15 14 C -0.10 -1.60 4.49 -26.73 -0.12 -1.72 15 15 C -0.12 -1.48 5.80 -26.73 -0.16 -1.63 15 16 C -0.15 -1.63 5.72 -26.73 -0.15 -1.78 15 17 C 0.09 1.25 4.12 -26.73 -0.11 1.14 15 18 H 0.08 0.91 8.14 -51.93 -0.42 0.48 15 19 F -0.21 -3.31 16.04 2.25 0.04 -3.28 15 20 C -0.14 -2.25 4.93 -26.73 -0.13 -2.38 15 21 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 22 H 0.07 1.19 8.10 -51.93 -0.42 0.77 15 23 H 0.07 1.13 8.10 -51.93 -0.42 0.71 15 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.07 0.87 7.80 -51.93 -0.41 0.47 15 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 15 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 28 H 0.09 1.69 8.11 -51.93 -0.42 1.27 15 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 LS Contribution 251.15 15.07 3.78 3.78 Total: -1.00 -33.03 251.15 -5.05 -38.08 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.68 Total: -0.66 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.44 Total: -7.69 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.76 Total: -24.92 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.49 Total: -21.87 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.03 -5.05 -38.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325915708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.655 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds