Wall clock time and date at job start Thu Apr 9 2020 11:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86806 * 120.00067 * 2 1 4 4 H 1.48491 * 109.47335 * 270.00387 * 3 2 1 5 5 H 1.48502 * 109.46756 * 30.00298 * 3 2 1 6 6 H 1.48496 * 109.46943 * 149.99932 * 3 2 1 7 7 C 1.38753 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00112 * 180.02562 * 7 2 1 9 9 O 1.34925 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.34308 * 116.99811 * 180.02562 * 9 7 2 11 11 O 1.21213 * 120.00203 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99838 * 180.02562 * 10 9 7 13 13 H 1.08992 * 109.47284 * 300.00493 * 12 10 9 14 14 C 1.52996 * 109.46990 * 179.97438 * 12 10 9 15 15 C 1.53000 * 109.47328 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 14 12 17 17 C 1.53006 * 109.47127 * 300.00449 * 16 15 14 18 18 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.46764 * 299.99647 * 17 16 15 20 20 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 21 21 H 0.97000 * 120.00293 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47368 * 60.00232 * 14 12 10 23 23 H 1.09001 * 109.47372 * 300.00388 * 14 12 10 24 24 H 1.09002 * 109.47398 * 180.02562 * 15 14 12 25 25 H 1.09001 * 109.47194 * 300.00476 * 15 14 12 26 26 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 27 27 H 1.08996 * 109.47853 * 180.02562 * 16 15 14 28 28 H 1.09002 * 109.47045 * 180.02562 * 20 17 16 29 29 H 1.09001 * 109.47375 * 59.99966 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5459 1.4402 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4330 -0.0001 12 6 1.3809 -4.8392 -0.0011 13 1 0.7578 -4.9299 0.8885 14 6 2.4346 -5.9485 -0.0016 15 6 1.7401 -7.3117 -0.0029 16 6 0.8664 -7.4378 -1.2525 17 6 -0.1874 -6.3285 -1.2520 18 1 -0.8096 -6.4180 -2.1425 19 9 -0.9871 -6.4455 -0.1101 20 6 0.5072 -4.9653 -1.2508 21 1 -0.4850 0.8400 0.0004 22 1 3.0575 -5.8585 0.8884 23 1 3.0575 -5.8576 -0.8916 24 1 2.4908 -8.1020 -0.0028 25 1 1.1170 -7.4029 0.8868 26 1 1.4893 -7.3467 -2.1422 27 1 0.3712 -8.4088 -1.2533 28 1 -0.2435 -4.1750 -1.2500 29 1 1.1303 -4.8741 -2.1405 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325915708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:52:39 Heat of formation + Delta-G solvation = -177.237195 kcal Electronic energy + Delta-G solvation = -14863.612631 eV Core-core repulsion = 12085.571922 eV Total energy + Delta-G solvation = -2778.040709 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 216.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.58777 -41.24852 -38.58793 -37.03909 -34.33822 -32.28829 -31.33077 -27.69461 -24.97971 -23.65157 -21.86753 -20.55103 -19.89413 -18.61339 -17.38054 -17.03972 -16.37397 -16.27973 -16.05732 -15.85147 -15.43168 -14.55587 -14.28470 -13.75413 -13.49070 -13.31111 -13.16701 -12.86406 -12.53639 -12.38362 -12.25850 -12.14770 -11.96324 -11.66615 -11.48350 -11.02597 -10.83466 -10.71703 -8.56054 -6.36683 1.27826 1.32265 1.49935 1.60923 2.09785 2.70542 2.94469 3.53742 3.57633 3.78712 3.87559 4.05421 4.16885 4.28274 4.33445 4.47468 4.65237 4.77574 4.94116 4.99563 5.07011 5.11789 5.16071 5.25950 5.30516 5.46215 5.80917 6.62983 6.88714 7.75019 8.64650 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.052549 B = 0.007696 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.709128 B = 3637.478573 C = 4007.487385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.004 4.004 3 Si 1.018 2.982 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.080 0.920 9 O -0.243 6.243 10 C 0.397 3.603 11 O -0.582 6.582 12 C -0.065 4.065 13 H 0.096 0.904 14 C -0.096 4.096 15 C -0.113 4.113 16 C -0.141 4.141 17 C 0.095 3.905 18 H 0.114 0.886 19 F -0.227 7.227 20 C -0.135 4.135 21 H 0.279 0.721 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 -12.623 -3.467 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.204 4.204 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.501 4.501 8 H 0.098 0.902 9 O -0.151 6.151 10 C 0.245 3.755 11 O -0.480 6.480 12 C -0.084 4.084 13 H 0.114 0.886 14 C -0.133 4.133 15 C -0.151 4.151 16 C -0.178 4.178 17 C 0.059 3.941 18 H 0.132 0.868 19 F -0.208 7.208 20 C -0.173 4.173 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.114 0.886 25 H 0.083 0.917 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.215 -12.459 -3.436 12.926 hybrid contribution 0.326 1.109 0.298 1.194 sum 0.111 -11.350 -3.139 11.776 Atomic orbital electron populations 1.70079 1.07684 1.29413 1.46784 1.26558 0.96880 1.02371 0.94581 0.84625 0.77638 0.74463 0.79613 1.18269 1.18344 1.18863 1.21437 0.92132 0.81364 1.55131 0.90209 1.83916 1.40372 1.14236 1.76563 1.24471 0.86654 0.88272 0.76110 1.90497 1.17099 1.88665 1.51727 1.20906 0.98193 0.87691 1.01611 0.88633 1.21398 0.95986 0.93094 1.02850 1.21521 0.99410 0.95387 0.98741 1.22191 0.97114 0.98515 1.00002 1.21754 0.91625 0.94639 0.86038 0.86776 1.92769 1.76074 1.97049 1.54894 1.22102 0.99229 0.98666 0.97284 0.91152 0.92321 0.91420 0.88623 0.91689 0.88388 0.88270 0.91844 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.40 13.67 21.62 0.30 -54.10 15 2 C 0.00 -0.21 5.49 84.88 0.47 0.26 15 3 Si 1.02 44.21 29.55 68.60 2.03 46.23 15 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 15 5 H -0.26 -10.41 7.11 99.48 0.71 -9.70 15 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 15 7 C -0.42 -26.54 9.65 67.94 0.66 -25.88 15 8 H 0.08 5.05 6.86 -2.91 -0.02 5.03 15 9 O -0.24 -14.80 9.65 14.85 0.14 -14.65 15 10 C 0.40 20.75 7.20 71.24 0.51 21.27 15 11 O -0.58 -32.83 15.22 20.77 0.32 -32.52 15 12 C -0.06 -2.49 2.51 -11.54 -0.03 -2.52 15 13 H 0.10 3.70 7.80 -2.39 -0.02 3.68 15 14 C -0.10 -2.96 4.49 30.59 0.14 -2.82 15 15 C -0.11 -2.47 5.80 30.59 0.18 -2.29 15 16 C -0.14 -2.59 5.72 30.60 0.17 -2.41 15 17 C 0.10 2.29 4.12 30.60 0.13 2.42 15 18 H 0.11 2.10 8.14 -2.39 -0.02 2.08 15 19 F -0.23 -6.68 16.04 44.97 0.72 -5.96 15 20 C -0.13 -4.41 4.93 30.59 0.15 -4.26 15 21 H 0.28 15.21 8.31 -92.71 -0.77 14.44 15 22 H 0.06 1.94 8.10 -2.39 -0.02 1.92 15 23 H 0.07 2.11 8.10 -2.39 -0.02 2.10 15 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.06 1.49 7.80 -2.39 -0.02 1.47 15 26 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 27 H 0.10 1.38 8.14 -2.39 -0.02 1.36 15 28 H 0.06 2.41 8.11 -2.39 -0.02 2.39 15 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 15 Total: -1.00 -74.02 251.15 7.01 -67.01 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.14 Total: 10.23 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 2.37 Total: -16.24 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.30 Total: -54.10 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: 0.46 Total: -47.17 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.72 Total: -5.96 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -74.02 7.01 -67.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325915708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.231 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds